#include <obotermform.h>

Inheritance diagram for pappso::OboTermForm:

Public Slots
void	displayOboTerm (OboPsiModTerm oboTerm)

Public Member Functions
	OboTermForm (QWidget *parent=nullptr)
	~OboTermForm ()
bool	isOboTerm () const
	tells if an OBO term is displayed
const OboPsiModTerm &	getOboPsiModTerm () const
	get the obo term or an exception

Protected Member Functions
void	parseDefinitionLabel ()
	parse the definition label to extract external links

Private Attributes
Ui::OboTermForm *	ui
OboPsiModTerm	m_oboPsiModTerm

Static Private Attributes
static QRegularExpression	m_findExternalLinks

Detailed Description

Definition at line 44 of file obotermform.h.

Constructor & Destructor Documentation

◆ OboTermForm()

OboTermForm::OboTermForm ( QWidget * parent = nullptr )

explicit

Default constructor

Definition at line 43 of file obotermform.cpp.

                                        : QWidget(parent), ui(new Ui::OboTermForm)
{
  qDebug();
  ui->setupUi(this);
 
  OboPsiModTerm empty;
  displayOboTerm(empty);
}

References OboTermForm(), displayOboTerm(), and ui.

Referenced by OboTermForm().

◆ ~OboTermForm()

pappso::OboTermForm::~OboTermForm ( )

Destructor

Definition at line 52 of file obotermform.cpp.

{
  delete ui;
}

References ui.

Member Function Documentation

◆ displayOboTerm

void pappso::OboTermForm::displayOboTerm ( pappso::OboPsiModTerm oboTerm )

slot

Definition at line 58 of file obotermform.cpp.

{
  qDebug() << oboTerm.getAccession();
  ui->accessionHttpButton->setText(oboTerm.getAccession());
  ui->nameLabel->setText(oboTerm.m_name);
  ui->definitionLabel->setText(oboTerm.m_definition);
  ui->diffFormulaLabel->setText(oboTerm.m_diffFormula);
  if(oboTerm.isValid())
    {
      ui->diffMonoLabel->setText(QString::number(oboTerm.m_diffMono, 'f', 4));
      parseDefinitionLabel();
    }
  else
    {
      ui->diffMonoLabel->setText("");
    }
  ui->originLabel->setText(oboTerm.m_origin);
  ui->psiModLabel->setText(oboTerm.m_psiModLabel);
 
 
  m_oboPsiModTerm = oboTerm;
}

References pappso::OboPsiModTerm::getAccession(), pappso::OboPsiModTerm::isValid(), pappso::OboPsiModTerm::m_definition, pappso::OboPsiModTerm::m_diffFormula, pappso::OboPsiModTerm::m_diffMono, pappso::OboPsiModTerm::m_name, m_oboPsiModTerm, pappso::OboPsiModTerm::m_origin, pappso::OboPsiModTerm::m_psiModLabel, parseDefinitionLabel(), and ui.

Referenced by pappso::OboChooserWidget::OboChooserWidget(), and OboTermForm().

◆ getOboPsiModTerm()

const pappso::OboPsiModTerm & pappso::OboTermForm::getOboPsiModTerm ( ) const

get the obo term or an exception

Definition at line 82 of file obotermform.cpp.

{
  if(isOboTerm())
    {
    }
  else
    {
      throw pappso::ExceptionNotFound(tr("OBO term not available"));
    }
  return m_oboPsiModTerm;
}

References isOboTerm(), and m_oboPsiModTerm.

◆ isOboTerm()

bool pappso::OboTermForm::isOboTerm ( ) const

tells if an OBO term is displayed

Definition at line 95 of file obotermform.cpp.

{
  return m_oboPsiModTerm.isValid();
}

References m_oboPsiModTerm.

Referenced by getOboPsiModTerm().

◆ parseDefinitionLabel()

void pappso::OboTermForm::parseDefinitionLabel ( )

protected

parse the definition label to extract external links

Definition at line 101 of file obotermform.cpp.

{
  QString label = ui->definitionLabel->text();
  //"Oxidation of methionine to methionine sulfoxide with neutral loss of
  // CH3SOH." [PubMed:18688235, PubMed:9004526]
 
  QLayoutItem *child;
  while((child = ui->xrefScrollAreaLayout->takeAt(0)) != 0)
    {
      if(child->widget() != NULL)
        {
          delete(child->widget());
        }
      delete child;
    }
 
  ui->xrefScrollArea->hide();
  QRegularExpressionMatch match = m_findExternalLinks.match(label);
  if(match.hasMatch())
    {
      QStringList pline = match.capturedTexts();
      ui->definitionLabel->setText(pline[1]);
 
      QStringList list_xref = pline[2].split(",");
 
      ui->xrefScrollArea->show();
      for(auto xref : list_xref)
        {
          HttpButton *newButton = new HttpButton;
          newButton->setText(xref.trimmed());
          newButton->setSizePolicy(QSizePolicy::Fixed, QSizePolicy::Fixed);
          ui->xrefScrollAreaLayout->addWidget(newButton);
        }
    }
}