rmsf {bio3d} | R Documentation |
Calculate atomic root mean squared fluctuations.
rmsf(xyz)
xyz |
numeric matrix of coordinates with each row corresponding to an individual conformer. |
An often used measure of conformational variance.
Returns a numeric vector of RMSF values.
Barry Grant
Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.
read.dcd
, fit.xyz
,
read.fasta.pdb
data(kinesin) attach(kinesin) r <- rmsf(xyz) plot( r[aln$ali["d1bg2__",]!="-"], typ="h", ylab="RMSF (A)")