seqbind {bio3d} | R Documentation |
Take a pair of vector or matrix arguments and combine them row-wise without
recycling the shorter argument (as is the case with rbind
).
seqbind(a, b, blank = "-")
a |
a vector or matrix. |
b |
a vector or matrix to be appended to a . |
blank |
a character to add to the shorter argument, to achieve the same length as the longer argument. |
A matrix combining the a
and b
input arguments row-wise.
Barry Grant
Grant, B.J. et al. (2006) Bioinformatics 22, 2695–2696.
seqaln
, read.fasta
,
read.pdb
, write.fasta
, rbind
## Not run: ## Read two pdbs a.pdb <- read.pdb( system.file("examples/1bg2.pdb", package="bio3d") ) b.pdb <- read.pdb( system.file("examples/d1goja_.ent", package="bio3d") ) seqs <- seqbind(aa321(a.pdb$atom[a.pdb$calpha,"resid"]), aa321(b.pdb$atom[b.pdb$calpha,"resid"])) # seqaln(seqs) ## End(Not run)