Linear mixed-effects models using S4 classes


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Documentation for package `lme4' version 0.99875-1

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A B C D F G H L M N P Q R S T U V W

-- A --

anova,lmer2-method Mixed Model Representations and *mer Methods
anova,mer-method Mixed Model Representations and *mer Methods

-- B --

BIC Bayesian Information Criterion
BIC,ANY-method Bayesian Information Criterion
BIC,logLik-method Bayesian Information Criterion

-- C --

cake Breakage angle of chocolate cakes
cbpp Serological Incidence of Contagious Bovine Pleuropneumonia in Ethiopia
chol,lmer,ANY-method Mixed Model Representations and *mer Methods
chol,pedigree,ANY-method Class "pedigree"
coef,lmList-method Class "lmList"
coef,mer-method Mixed Model Representations and *mer Methods
coef.lmer-class Mixed Model Representations and *mer Methods
coerce,lmer,dsTMatrix-method Mixed Model Representations and *mer Methods
coerce,mer,dtCMatrix-method Mixed Model Representations and *mer Methods
coerce,mer,pMatrix-method Mixed Model Representations and *mer Methods
coerce,pedigree,data.frame-method Class "pedigree"
coerce,pedigree,dtCMatrix-method Class "pedigree"
confint,lmList-method Class "lmList"
confint,mer-method Mixed Model Representations and *mer Methods

-- D --

deviance,lmer2-method Mixed Model Representations and *mer Methods
deviance,mer-method Mixed Model Representations and *mer Methods
deviance,summary.lmer2-method Mixed Model Representations and *mer Methods
deviance,summary.mer-method Mixed Model Representations and *mer Methods

-- F --

fitted,mer-method Mixed Model Representations and *mer Methods
fixed.effects Extract Fixed Effects
fixef Extract Fixed Effects
fixef,ANY-method Extract Fixed Effects
fixef,glmer-method Extract Fixed Effects
fixef,lmer2-method Extract Fixed Effects
fixef,mer-method Extract Fixed Effects
formula,lmList-method Class "lmList"
formula,mer-method Mixed Model Representations and *mer Methods

-- G --

glmer-class Mixed Model Representations and *mer Methods
glmer2-class Mixed Model Representations and *mer Methods
gsummary Summarize a data frame by group
gsummary,data.frame,ANY,ANY,ANY,factor-method Summarize a data frame by group
gsummary-methods Summarize a data frame by group

-- H --

hatTrace Extract the trace of the `hat' matrix
head,pedigree-method Class "pedigree"

-- L --

lmer Fit (Generalized) Linear Mixed-Effects Models
lmer-class Mixed Model Representations and *mer Methods
lmer2 Fit (Generalized) Linear Mixed-Effects Models
lmer2-class Mixed Model Representations and *mer Methods
lmList List of lm Objects with a Common Model
lmList,formula,data.frame-method List of lm Objects with a Common Model
lmList-class Class "lmList"
logLik,lmer2-method Mixed Model Representations and *mer Methods
logLik,mer-method Mixed Model Representations and *mer Methods
logLik,summary.lmer2-method Mixed Model Representations and *mer Methods
logLik,summary.mer-method Mixed Model Representations and *mer Methods

-- M --

mcmcsamp Generate an MCMC sample
mcmcsamp,glmer-method Generate an MCMC sample
mcmcsamp,lmer-method Generate an MCMC sample
mcmcsamp,lmer2-method Generate an MCMC sample
mer-class Mixed Model Representations and *mer Methods

-- N --

nlmer Fit Nonlinear Mixed Models
nlmer-class Representation of a Nonlinear Mixed Model

-- P --

pedigree Pedigree Constructor
pedigree-class Class "pedigree"
plot,coef.lmer-method Mixed Model Representations and *mer Methods
plot,lmList-method Class "lmList"
plot,lmList.confint-method Class "lmList"
plot,ranef.lmer-method Mixed Model Representations and *mer Methods
pooledSD Extract pooled standard deviation
pooledSD,lmList-method Class "lmList"
print,lmer2-method Mixed Model Representations and *mer Methods
print,mer-method Mixed Model Representations and *mer Methods

-- Q --

qqmath,ranef.lmer-method Mixed Model Representations and *mer Methods

-- R --

ranef Extract Random Effects
ranef,ANY-method Extract Random Effects
ranef,lmer-method Extract Random Effects
ranef,lmer2-method Extract Random Effects
ranef,mer-method Extract Random Effects
ranef-methods Extract Random Effects
ranef.lmer-class Mixed Model Representations and *mer Methods
resid,glmer-method Mixed Model Representations and *mer Methods
resid,lmer-method Mixed Model Representations and *mer Methods
residuals,glmer-method Mixed Model Representations and *mer Methods
residuals,lmer-method Mixed Model Representations and *mer Methods

-- S --

show,lmer2-method Mixed Model Representations and *mer Methods
show,lmList-method Class "lmList"
show,mer-method Mixed Model Representations and *mer Methods
show,nlmer-method Representation of a Nonlinear Mixed Model
show,pedigree-method Class "pedigree"
show,VarCorr-method Class "VarCorr"
simulate,lmer2-method Mixed Model Representations and *mer Methods
simulate,mer-method Mixed Model Representations and *mer Methods
sleepstudy Reaction times in a sleep deprivation study
summary,lmer2-method Mixed Model Representations and *mer Methods
summary,mer-method Mixed Model Representations and *mer Methods
summary,summary.lmer2-method Mixed Model Representations and *mer Methods
summary,summary.mer-method Mixed Model Representations and *mer Methods
summary.glmer-class Mixed Model Representations and *mer Methods
summary.lmer-class Mixed Model Representations and *mer Methods
summary.lmer2-class Mixed Model Representations and *mer Methods
summary.mer-class Mixed Model Representations and *mer Methods

-- T --

tail,pedigree-method Class "pedigree"
terms,lmer-method Mixed Model Representations and *mer Methods

-- U --

update,lmList-method Class "lmList"
update,mer-method Mixed Model Representations and *mer Methods

-- V --

VarCorr Extract variance and correlation components
VarCorr,lmer2-method Extract variance and correlation components
VarCorr,mer-method Extract variance and correlation components
VarCorr,nlmer-method Extract variance and correlation components
VarCorr-class Class "VarCorr"
vcov,lmer2-method Mixed Model Representations and *mer Methods
vcov,mer-method Mixed Model Representations and *mer Methods
vcov,summary.lmer2-method Mixed Model Representations and *mer Methods
vcov,summary.mer-method Mixed Model Representations and *mer Methods

-- W --

with,lmer-method Mixed Model Representations and *mer Methods