Linear mixed-effects models using S4 classes


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Documentation for package `lme4' version 0.9975-10

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anova,mer-method Mixed Model Representations and *mer Methods
BIC Bayesian Information Criterion
BIC,ANY-method Bayesian Information Criterion
BIC,logLik-method Bayesian Information Criterion
cbpp Serological Incidence of Contagious Bovine Pleuropneumonia in Ethiopia
chol,lmer,ANY-method Mixed Model Representations and *mer Methods
chol,pedigree,ANY-method Class "pedigree"
coef,lmList-method Class "lmList"
coef,mer-method Mixed Model Representations and *mer Methods
coef.lmer-class Mixed Model Representations and *mer Methods
coerce,lmer,dsTMatrix-method Mixed Model Representations and *mer Methods
coerce,mer,dtCMatrix-method Mixed Model Representations and *mer Methods
coerce,mer,pMatrix-method Mixed Model Representations and *mer Methods
coerce,pedigree,data.frame-method Class "pedigree"
coerce,pedigree,dtCMatrix-method Class "pedigree"
confint,lmList-method Class "lmList"
confint,mer-method Mixed Model Representations and *mer Methods
deviance,mer-method Mixed Model Representations and *mer Methods
deviance,summary.mer-method Mixed Model Representations and *mer Methods
fitted,mer-method Mixed Model Representations and *mer Methods
fixed.effects Extract Fixed Effects
fixef Extract Fixed Effects
fixef,ANY-method Extract Fixed Effects
fixef,glmer-method Extract Fixed Effects
fixef,mer-method Extract Fixed Effects
formula,lmList-method Class "lmList"
formula,mer-method Mixed Model Representations and *mer Methods
glmer-class Mixed Model Representations and *mer Methods
gsummary Summarize a data frame by group
gsummary,data.frame,ANY,ANY,ANY,factor-method Summarize a data frame by group
gsummary-methods Summarize a data frame by group
hatTrace Extract the trace of the `hat' matrix
head,pedigree-method Class "pedigree"
lmer Fit (Generalized) Linear Mixed-Effects Models
lmer,formula-method Fit (Generalized) Linear Mixed-Effects Models
lmer-class Mixed Model Representations and *mer Methods
lmList List of lm Objects with a Common Model
lmList,formula,data.frame-method List of lm Objects with a Common Model
lmList-class Class "lmList"
logLik,mer-method Mixed Model Representations and *mer Methods
logLik,summary.mer-method Mixed Model Representations and *mer Methods
mcmcsamp Generate an MCMC sample
mcmcsamp,glmer-method Generate an MCMC sample
mcmcsamp,lmer-method Generate an MCMC sample
mer-class Mixed Model Representations and *mer Methods
pedigree Pedigree Constructor
pedigree-class Class "pedigree"
plot,coef.lmer-method Mixed Model Representations and *mer Methods
plot,lmList-method Class "lmList"
plot,lmList.confint-method Class "lmList"
plot,ranef.lmer-method Mixed Model Representations and *mer Methods
pooledSD Extract pooled standard deviation
pooledSD,lmList-method Class "lmList"
print,mer-method Mixed Model Representations and *mer Methods
qqmath,ranef.lmer-method Mixed Model Representations and *mer Methods
ranef Extract Random Effects
ranef,ANY-method Extract Random Effects
ranef,lmer-method Extract Random Effects
ranef,mer-method Extract Random Effects
ranef-methods Extract Random Effects
ranef.lmer-class Mixed Model Representations and *mer Methods
resid,glmer-method Mixed Model Representations and *mer Methods
resid,lmer-method Mixed Model Representations and *mer Methods
residuals,glmer-method Mixed Model Representations and *mer Methods
residuals,lmer-method Mixed Model Representations and *mer Methods
show,lmList-method Class "lmList"
show,mer-method Mixed Model Representations and *mer Methods
show,pedigree-method Class "pedigree"
show,VarCorr-method Class "VarCorr"
simulate,mer-method Mixed Model Representations and *mer Methods
sleepstudy Reaction times in a sleep deprivation study
summary,mer-method Mixed Model Representations and *mer Methods
summary,summary.mer-method Mixed Model Representations and *mer Methods
summary.glmer-class Mixed Model Representations and *mer Methods
summary.lmer-class Mixed Model Representations and *mer Methods
summary.mer-class Mixed Model Representations and *mer Methods
tail,pedigree-method Class "pedigree"
terms,lmer-method Mixed Model Representations and *mer Methods
update,lmList-method Class "lmList"
update,mer-method Mixed Model Representations and *mer Methods
VarCorr Extract variance and correlation components
VarCorr,mer-method Extract variance and correlation components
VarCorr-class Class "VarCorr"
vcov,mer-method Mixed Model Representations and *mer Methods
vcov,summary.mer-method Mixed Model Representations and *mer Methods
with,lmer-method Mixed Model Representations and *mer Methods