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elastix::TransformBendingEnergyPenalty< TElastix > Class Template Reference

#include <elxTransformBendingEnergyPenaltyTerm.h>

Inheritance diagram for elastix::TransformBendingEnergyPenalty< TElastix >:
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Collaboration diagram for elastix::TransformBendingEnergyPenalty< TElastix >:
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Public Types

typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass2::ConfigurationType 
ConfigurationType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass1::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass1::DerivativeType DerivativeType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef
Superclass1::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass1::FixedImageLimiterOutputType 
FixedImageLimiterOutputType
 
typedef
Superclass1::FixedImageLimiterType 
FixedImageLimiterType
 
typedef
Superclass1::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass1::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass1::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass1::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass1::FixedImageType FixedImageType
 
typedef
Superclass1::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass1::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass1::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass1::GradientImageType 
GradientImageType
 
typedef
Superclass1::GradientPixelType 
GradientPixelType
 
typedef
Superclass1::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass1::ImageSampleContainerType 
ImageSampleContainerType
 
typedef
Superclass1::ImageSamplerPointer 
ImageSamplerPointer
 
typedef
Superclass1::ImageSamplerType 
ImageSamplerType
 
typedef Superclass1::InputPointType InputPointType
 
typedef
Superclass1::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass1::InterpolatorType 
InterpolatorType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::MeasureType MeasureType
 
typedef
Superclass1::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass1::MovingImageLimiterOutputType 
MovingImageLimiterOutputType
 
typedef
Superclass1::MovingImageLimiterType 
MovingImageLimiterType
 
typedef
Superclass1::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass1::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass1::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass1::MovingImageRegionType 
MovingImageRegionType
 
typedef
Superclass1::MovingImageType 
MovingImageType
 
typedef
Superclass1::OutputPointType 
OutputPointType
 
typedef Superclass1::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass1::RealType RealType
 
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass2::RegistrationType 
RegistrationType
 
typedef
TransformBendingEnergyPenalty 
Self
 
typedef
TransformBendingEnergyPenaltyTerm
< typename MetricBase
< TElastix >::FixedImageType,
double
Superclass1
 
typedef MetricBase< TElastix > Superclass2
 
typedef TimerType::Pointer TimerPointer
 
typedef tmr::Timer TimerType
 
typedef
Superclass1::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass1::TransformParametersType 
TransformParametersType
 
typedef
Superclass1::TransformPointer 
TransformPointer
 
typedef Superclass1::TransformType TransformType
 
- Public Types inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::DerivativeValueType 
DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImagePointer 
FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef Superclass::HessianType HessianType
 
typedef
Superclass::HessianValueType 
HessianValueType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InternalMatrixType 
InternalMatrixType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef
Superclass::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
 
typedef
Superclass::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImagePointer 
MovingImagePointer
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef Superclass::ScalarType ScalarType
 
typedef
TransformBendingEnergyPenaltyTerm 
Self
 
typedef
Superclass::SpatialHessianType 
SpatialHessianType
 
typedef
Superclass::SpatialJacobianType 
SpatialJacobianType
 
typedef TransformPenaltyTerm
< MetricBase< TElastix >
::FixedImageType, double
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef
Superclass::DerivativeValueType 
DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef
Superclass::FixedImagePixelType 
FixedImagePixelType
 
typedef
Superclass::FixedImagePointer 
FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef
Superclass::ImageSampleContainerPointer 
ImageSampleContainerPointer
 
typedef
Superclass::ImageSampleContainerType 
ImageSampleContainerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
TransformType::InternalMatrixType 
InternalMatrixType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef
TransformType::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
 
typedef
TransformType::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef
Superclass::MovingImagePointer 
MovingImagePointer
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef double ScalarType
 
typedef TransformPenaltyTerm Self
 
typedef
TransformType::SpatialHessianType 
SpatialHessianType
 
typedef
TransformType::SpatialJacobianType 
SpatialJacobianType
 
typedef
AdvancedImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::FixedImageType
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::AdvancedTransformType 
TransformType
 
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef AdvancedTransform
< ScalarType,
FixedImageDimension,
MovingImageDimension > 
AdvancedTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::CoordinateRepresentationType 
CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef
Superclass::FixedImageConstPointer 
FixedImageConstPointer
 
typedef
FixedImageLimiterType::OutputType 
FixedImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
FixedImageDimension > 
FixedImageLimiterType
 
typedef
Superclass::FixedImageMaskPointer 
FixedImageMaskPointer
 
typedef
Superclass::FixedImageMaskType 
FixedImageMaskType
 
typedef FixedImageType::PixelType FixedImagePixelType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef
Superclass::FixedImageRegionType 
FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef
Superclass::GradientImageFilterPointer 
GradientImageFilterPointer
 
typedef
Superclass::GradientImageFilterType 
GradientImageFilterType
 
typedef
Superclass::GradientImagePointer 
GradientImagePointer
 
typedef
Superclass::GradientImageType 
GradientImageType
 
typedef
Superclass::GradientPixelType 
GradientPixelType
 
typedef vnl_sparse_matrix
< HessianValueType
HessianType
 
typedef DerivativeType::ValueType HessianValueType
 
typedef
ImageSamplerType::OutputVectorContainerPointer 
ImageSampleContainerPointer
 
typedef
ImageSamplerType::OutputVectorContainerType 
ImageSampleContainerType
 
typedef ImageSamplerType::Pointer ImageSamplerPointer
 
typedef ImageSamplerBase
< FixedImageType
ImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef
Superclass::InterpolatorPointer 
InterpolatorPointer
 
typedef
Superclass::InterpolatorType 
InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef
Superclass::MovingImageConstPointer 
MovingImageConstPointer
 
typedef FixedArray< double,
itkGetStaticConstMacro(MovingImageDimension) > 
MovingImageDerivativeScalesType
 
typedef
MovingImageLimiterType::OutputType 
MovingImageLimiterOutputType
 
typedef LimiterFunctionBase
< RealType,
MovingImageDimension > 
MovingImageLimiterType
 
typedef
Superclass::MovingImageMaskPointer 
MovingImageMaskPointer
 
typedef
Superclass::MovingImageMaskType 
MovingImageMaskType
 
typedef
Superclass::MovingImagePixelType 
MovingImagePixelType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef MovingImageType::RegionType MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef TransformType::ScalarType ScalarType
 
typedef AdvancedImageToImageMetric Self
 
typedef ImageToImageMetric
< MetricBase< TElastix >
::FixedImageType, MetricBase
< TElastix >::FixedImageType
Superclass
 
typedef
Superclass::TransformJacobianType 
TransformJacobianType
 
typedef
Superclass::TransformParametersType 
TransformParametersType
 
typedef
Superclass::TransformPointer 
TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from elastix::MetricBase< TElastix >
typedef
AdvancedImageToImageMetric
< FixedImageType,
MovingImageType
AdvancedMetricType
 
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass::ConfigurationType 
ConfigurationType
 
typedef
ITKBaseType::ParametersValueType 
CoordinateRepresentationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef PointSet
< CoordinateRepresentationType,
FixedImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
FixedImageDimension,
FixedImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
FixedPointSetType
 
typedef FixedImageType::PointType FixedPointType
 
typedef FixedPointType::ValueType FixedPointValueType
 
typedef
AdvancedMetricType::ImageSamplerType 
ImageSamplerBaseType
 
typedef SingleValuedCostFunction ITKBaseType
 
typedef ITKBaseType::MeasureType MeasureType
 
typedef
ElastixType::MovingImageType 
MovingImageType
 
typedef PointSet
< CoordinateRepresentationType,
MovingImageDimension,
DefaultStaticMeshTraits
< CoordinateRepresentationType,
MovingImageDimension,
MovingImageDimension,
CoordinateRepresentationType,
CoordinateRepresentationType,
CoordinateRepresentationType > > 
MovingPointSetType
 
typedef MovingImageType::PointType MovingPointType
 
typedef MovingPointType::ValueType MovingPointValueType
 
typedef
Superclass::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass::RegistrationType 
RegistrationType
 
typedef MetricBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
 
typedef
ElastixType::ConfigurationType 
ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef
ElastixType::RegistrationBaseType 
RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void BeforeEachResolution (void)
 
 elxClassNameMacro ("TransformBendingEnergyPenalty")
 
virtual const char * GetClassName () const
 
virtual void Initialize (void) throw (ExceptionObject)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
- Public Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
virtual void GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const
 
virtual unsigned int GetNumberOfSamplesForSelfHessian () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
virtual MeasureType GetValue (const ParametersType &parameters) const
 
virtual void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
virtual void SetNumberOfSamplesForSelfHessian (unsigned int _arg)
 
- Public Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
virtual const
FixedImageLimiterType
GetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler (void) const
 
virtual const
MovingImageDerivativeScalesType
GetMovingImageDerivativeScales ()
 
virtual const
MovingImageLimiterType
GetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
const AdvancedTransformTypeGetTransform (void) const
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
 
virtual bool GetAdvancedMetricUseImageSampler (void) const
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual MeasureType GetCurrentExactMetricValue (void) const
 
virtual bool GetShowExactMetricValue (void) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SelectNewSamples (void)
 
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeRegistration (void)
 
virtual void BeforeRegistrationBase (void)
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
static Pointer New ()
 

Protected Member Functions

 TransformBendingEnergyPenalty ()
 
virtual ~TransformBendingEnergyPenalty ()
 
- Protected Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
 TransformBendingEnergyPenaltyTerm ()
 
virtual ~TransformBendingEnergyPenaltyTerm ()
 
- Protected Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
virtual bool CheckForBSplineTransform (BSplineTransformPointer &bspline) const
 
 TransformPenaltyTerm ()
 
virtual ~TransformPenaltyTerm ()
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
 AdvancedImageToImageMetric ()
 
virtual void CheckForAdvancedTransform (void)
 
virtual void CheckForBSplineInterpolator (void)
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
 
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
 
virtual void InitializeLimiters (void)
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
 
virtual ~AdvancedImageToImageMetric ()
 
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 
 MetricBase ()
 
virtual ~MetricBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

void operator= (const Self &)
 
 TransformBendingEnergyPenalty (const Self &)
 

Additional Inherited Members

- Protected Types inherited from itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef
Superclass::BSplineTransformType 
BSplineTransformType
 
typedef
Superclass::CombinationTransformType 
CombinationTransformType
 
typedef
Superclass::FixedImageIndexType 
FixedImageIndexType
 
typedef
Superclass::FixedImageIndexValueType 
FixedImageIndexValueType
 
typedef
Superclass::FixedImagePointType 
FixedImagePointType
 
typedef
Superclass::MovingImageContinuousIndexType 
MovingImageContinuousIndexType
 
typedef
Superclass::MovingImageIndexType 
MovingImageIndexType
 
typedef
Superclass::MovingImagePointType 
MovingImagePointType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef ImageGridSampler
< FixedImageType
SelfHessianSamplerType
 
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef itk::ImageGridSampler
< FixedImageType
ExactMetricImageSamplerType
 
typedef
ExactMetricImageSamplerType::SampleGridSpacingType 
ExactMetricSampleGridSpacingType
 
typedef ITKBaseType::ParametersType ParametersType
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
AdvancedTransformType::Pointer m_AdvancedTransform
 
BSplineInterpolatorType::Pointer m_BSplineInterpolator
 
BSplineInterpolatorFloatType::Pointer m_BSplineInterpolatorFloat
 
CentralDifferenceGradientFilterType::Pointer m_CentralDifferenceGradientFilter
 
FixedImageLimiterType::Pointer m_FixedImageLimiter
 
FixedImageLimiterOutputType m_FixedImageMaxLimit
 
FixedImageLimiterOutputType m_FixedImageMinLimit
 
FixedImagePixelType m_FixedImageTrueMax
 
FixedImagePixelType m_FixedImageTrueMin
 
ImageSamplerPointer m_ImageSampler
 
bool m_InterpolatorIsBSpline
 
bool m_InterpolatorIsBSplineFloat
 
bool m_InterpolatorIsReducedBSpline
 
MovingImageLimiterType::Pointer m_MovingImageLimiter
 
MovingImageLimiterOutputType m_MovingImageMaxLimit
 
MovingImageLimiterOutputType m_MovingImageMinLimit
 
MovingImagePixelType m_MovingImageTrueMax
 
MovingImagePixelType m_MovingImageTrueMin
 
ReducedBSplineInterpolatorType::Pointer m_ReducedBSplineInterpolator
 
bool m_TransformIsAdvanced
 
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
 
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
 
ExactMetricImageSamplerType::Pointer m_ExactMetricSampler
 
bool m_ShowExactMetricValue
 

Detailed Description

template<class TElastix>
class elastix::TransformBendingEnergyPenalty< TElastix >

A penalty term based on the bending energy of a thin metal sheet.

[1]: D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D. J. Hawkes, "Nonrigid registration using free-form deformations: Application to breast MR images", IEEE Trans. Med. Imaging 18, 712-721, 1999.
[2]: M. Staring and S. Klein, "Itk::Transforms supporting spatial derivatives"", Insight Journal, http://hdl.handle.net/10380/3215. The parameters used in this class are:

Parameters:
Metric: Select this metric as follows:
(Metric "TransformBendingEnergyPenalty")

Definition at line 47 of file elxTransformBendingEnergyPenaltyTerm.h.

Member Typedef Documentation

Definition at line 133 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 132 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef SmartPointer<const Self> elastix::TransformBendingEnergyPenalty< TElastix >::ConstPointer

Definition at line 63 of file elxTransformBendingEnergyPenaltyTerm.h.

Typedefs from the superclass.

Definition at line 79 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 105 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 131 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::TransformBendingEnergyPenalty< TElastix >::ElastixType

Typedef's inherited from elastix.

Definition at line 130 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 84 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 117 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 114 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 101 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 100 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 107 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 85 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 83 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 99 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 98 of file elxTransformBendingEnergyPenaltyTerm.h.

Definition at line 97 of file elxTransformBendingEnergyPenaltyTerm.h.

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Definition at line 88 of file elxTransformBendingEnergyPenaltyTerm.h.

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Definition at line 92 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::TransformBendingEnergyPenalty< TElastix >::ITKBaseType

Definition at line 136 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::MeasureType elastix::TransformBendingEnergyPenalty< TElastix >::MeasureType

Definition at line 104 of file elxTransformBendingEnergyPenaltyTerm.h.

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template<class TElastix >
typedef SmartPointer<Self> elastix::TransformBendingEnergyPenalty< TElastix >::Pointer

Definition at line 62 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::RealType elastix::TransformBendingEnergyPenalty< TElastix >::RealType

Definition at line 94 of file elxTransformBendingEnergyPenaltyTerm.h.

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Definition at line 134 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef TransformBendingEnergyPenalty elastix::TransformBendingEnergyPenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 57 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef TransformBendingEnergyPenaltyTerm< typename MetricBase<TElastix>::FixedImageType, double > elastix::TransformBendingEnergyPenalty< TElastix >::Superclass1

Definition at line 60 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef MetricBase<TElastix> elastix::TransformBendingEnergyPenalty< TElastix >::Superclass2

Definition at line 61 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef TimerType::Pointer elastix::TransformBendingEnergyPenalty< TElastix >::TimerPointer

Typedef for timer.

Definition at line 141 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
typedef tmr::Timer elastix::TransformBendingEnergyPenalty< TElastix >::TimerType

Typedef for timer.

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Constructor & Destructor Documentation

template<class TElastix >
elastix::TransformBendingEnergyPenalty< TElastix >::TransformBendingEnergyPenalty ( )
inlineprotected

The constructor.

Definition at line 157 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
virtual elastix::TransformBendingEnergyPenalty< TElastix >::~TransformBendingEnergyPenalty ( )
inlineprotectedvirtual

The destructor.

Definition at line 160 of file elxTransformBendingEnergyPenaltyTerm.h.

template<class TElastix >
elastix::TransformBendingEnergyPenalty< TElastix >::TransformBendingEnergyPenalty ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::TransformBendingEnergyPenalty< TElastix >::BeforeEachResolution ( void  )
virtual

Do some things before each resolution:

  • Set options for SelfHessian

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::TransformBendingEnergyPenalty< TElastix >::elxClassNameMacro ( "TransformBendingEnergyPenalty< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "TransformBendingEnergyPenalty")

template<class TElastix >
virtual const char* elastix::TransformBendingEnergyPenalty< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::TransformBendingEnergyPenalty< TElastix >::Initialize ( void  ) throw (ExceptionObject)
virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >.

template<class TElastix >
elastix::TransformBendingEnergyPenalty< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TElastix >
elastix::TransformBendingEnergyPenalty< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

template<class TElastix >
static Pointer elastix::TransformBendingEnergyPenalty< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::TransformBendingEnergyPenalty< TElastix >::operator= ( const Self )
private

The private copy constructor.



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