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elastix::EulerTransformElastix< TElastix > Class Template Reference

#include <elxEulerTransform.h>

Inheritance diagram for elastix::EulerTransformElastix< TElastix >:
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Collaboration diagram for elastix::EulerTransformElastix< TElastix >:
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Public Types

typedef
Superclass2::CombinationTransformType 
CombinationTransformType
 
typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass2::ConfigurationType 
ConfigurationType
 
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass2::CoordRepType CoordRepType
 
typedef
FixedImageType::DirectionType 
DirectionType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef EulerTransformType::Pointer EulerTransformPointer
 
typedef EulerTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > 
EulerTransformType
 
typedef Superclass2::FixedImageType FixedImageType
 
typedef FixedImageType::IndexType IndexType
 
typedef IndexType::IndexValueType IndexValueType
 
typedef
Superclass1::InputCovariantVectorType 
InputCovariantVectorType
 
typedef Superclass1::InputPointType InputPointType
 
typedef
Superclass1::InputVectorType 
InputVectorType
 
typedef
Superclass1::InputVnlVectorType 
InputVnlVectorType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::JacobianType JacobianType
 
typedef
Superclass2::MovingImageType 
MovingImageType
 
typedef
EulerTransformType::OffsetType 
OffsetType
 
typedef
Superclass1::OutputCovariantVectorType 
OutputCovariantVectorType
 
typedef
Superclass1::OutputPointType 
OutputPointType
 
typedef
Superclass1::OutputVectorType 
OutputVectorType
 
typedef
Superclass1::OutputVnlVectorType 
OutputVnlVectorType
 
typedef Superclass1::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef FixedImageType::PointType PointType
 
typedef FixedImageType::RegionType RegionType
 
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass2::RegistrationType 
RegistrationType
 
typedef Superclass1::ScalarType ScalarType
 
typedef Superclass2::ScalesType ScalesType
 
typedef EulerTransformElastix Self
 
typedef FixedImageType::SizeType SizeType
 
typedef FixedImageType::SpacingType SpacingType
 
typedef
AdvancedCombinationTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > 
Superclass1
 
typedef elx::TransformBase
< TElastix > 
Superclass2
 
typedef
TransformInitializerType::Pointer 
TransformInitializerPointer
 
typedef
CenteredTransformInitializer
< EulerTransformType,
FixedImageType,
MovingImageType
TransformInitializerType
 
- Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
typedef SmartPointer< const SelfConstPointer
 
typedef
CurrentTransformType::Pointer 
CurrentTransformPointer
 
typedef Superclass CurrentTransformType
 
typedef const JacobianType
&(Self::* 
GetJacobianFunctionPointer )(const InputPointType &) const
 
typedef void(Self::* GetJacobianOfSpatialHessianFunctionPointer )(const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
 
typedef void(Self::* GetJacobianOfSpatialHessianFunctionPointer2 )(const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
 
typedef void(Self::* GetJacobianOfSpatialJacobianFunctionPointer )(const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
 
typedef void(Self::* GetJacobianOfSpatialJacobianFunctionPointer2 )(const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
 
typedef void(Self::* GetSparseJacobianFunctionPointer )(const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
typedef void(Self::* GetSpatialHessianFunctionPointer )(const InputPointType &, SpatialHessianType &) const
 
typedef void(Self::* GetSpatialJacobianFunctionPointer )(const InputPointType &, SpatialJacobianType &) const
 
typedef
InitialTransformType::ConstPointer 
InitialTransformConstPointer
 
typedef
InitialTransformType::Pointer 
InitialTransformPointer
 
typedef Superclass InitialTransformType
 
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
 
typedef Superclass::InputPointType InputPointType
 
typedef Superclass::InputVectorType InputVectorType
 
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
 
typedef
Superclass::InternalMatrixType 
InternalMatrixType
 
typedef
Superclass::JacobianOfSpatialHessianType 
JacobianOfSpatialHessianType
 
typedef
Superclass::JacobianOfSpatialJacobianType 
JacobianOfSpatialJacobianType
 
typedef Superclass::JacobianType JacobianType
 
typedef
Superclass::NonZeroJacobianIndicesType 
NonZeroJacobianIndicesType
 
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef
Superclass::OutputVectorType 
OutputVectorType
 
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::ScalarType ScalarType
 
typedef
AdvancedCombinationTransform 
Self
 
typedef
Superclass::SpatialHessianType 
SpatialHessianType
 
typedef
Superclass::SpatialJacobianType 
SpatialJacobianType
 
typedef AdvancedTransform
< elx::TransformBase< TElastix >
::CoordRepType, NDimensions,
NDimensions > 
Superclass
 
typedef OutputPointType(Self::* TransformPointFunctionPointer )(const InputPointType &) const
 
- Public Types inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::InputCovariantVectorType 
InputCovariantVectorType
 
typedef Superclass::InputPointType InputPointType
 
typedef Superclass::InputVectorType InputVectorType
 
typedef
Superclass::InputVnlVectorType 
InputVnlVectorType
 
typedef
SpatialJacobianType::InternalMatrixType 
InternalMatrixType
 
typedef std::vector
< SpatialHessianType
JacobianOfSpatialHessianType
 
typedef std::vector
< SpatialJacobianType
JacobianOfSpatialJacobianType
 
typedef Superclass::JacobianType JacobianType
 
typedef std::vector< unsigned
long > 
NonZeroJacobianIndicesType
 
typedef
Superclass::OutputCovariantVectorType 
OutputCovariantVectorType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef
Superclass::OutputVectorType 
OutputVectorType
 
typedef
Superclass::OutputVnlVectorType 
OutputVnlVectorType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::ScalarType ScalarType
 
typedef AdvancedTransform Self
 
typedef FixedArray< Matrix
< ScalarType,
InputSpaceDimension,
InputSpaceDimension >
, OutputSpaceDimension > 
SpatialHessianType
 
typedef Matrix< ScalarType,
OutputSpaceDimension,
InputSpaceDimension > 
SpatialJacobianType
 
typedef Transform
< elx::TransformBase< TElastix >
::CoordRepType,
NInputDimensions,
NOutputDimensions > 
Superclass
 
- Public Types inherited from elastix::TransformBase< TElastix >
typedef
itk::AdvancedCombinationTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension) > 
CombinationTransformType
 
typedef
ConfigurationType::CommandLineArgumentMapType 
CommandLineArgumentMapType
 
typedef
ConfigurationType::CommandLineEntryType 
CommandLineEntryType
 
typedef ComponentDatabase ComponentDatabaseType
 
typedef
ComponentDatabaseType::ComponentDescriptionType 
ComponentDescriptionType
 
typedef
Superclass::ConfigurationPointer 
ConfigurationPointer
 
typedef
Superclass::ConfigurationType 
ConfigurationType
 
typedef ElastixType::CoordRepType CoordRepType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef
CombinationTransformType::InitialTransformType 
InitialTransformType
 
typedef ITKBaseType::InputPointType InputPointType
 
typedef itk::AdvancedTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension),
itkGetStaticConstMacro(MovingImageDimension) > 
ITKBaseType
 
typedef
RegistrationType::ITKBaseType 
ITKRegistrationType
 
typedef
ElastixType::MovingImageType 
MovingImageType
 
typedef itk::Object ObjectType
 
typedef
ITKRegistrationType::OptimizerType 
OptimizerType
 
typedef
ITKBaseType::OutputPointType 
OutputPointType
 
typedef ITKBaseType::ParametersType ParametersType
 
typedef elx::ProgressCommand ProgressCommandType
 
typedef
ComponentDatabase::PtrToCreator 
PtrToCreator
 
typedef
Superclass::RegistrationPointer 
RegistrationPointer
 
typedef
Superclass::RegistrationType 
RegistrationType
 
typedef OptimizerType::ScalesType ScalesType
 
typedef TransformBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
typedef ParametersType::ValueType ValueType
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef
ElastixType::ConfigurationPointer 
ConfigurationPointer
 
typedef
ElastixType::ConfigurationType 
ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef
ElastixType::RegistrationBaseType 
RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void BeforeRegistration (void)
 
 elxClassNameMacro ("EulerTransform")
 
virtual const char * GetClassName () const
 
virtual void InitializeTransform (void)
 
 itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
 
virtual void ReadFromFile (void)
 
virtual void SetScales (void)
 
virtual void WriteToFile (const ParametersType &param) const
 
- Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
virtual CurrentTransformTypeGetCurrentTransform ()
 
virtual const ParametersTypeGetFixedParameters (void) const
 
virtual bool GetHasNonZeroSpatialHessian (void) const
 
virtual const
InitialTransformType
GetInitialTransform ()
 
virtual bool GetInverse (Self *inverse) const
 
virtual const JacobianTypeGetJacobian (const InputPointType &point) const
 
virtual void GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual unsigned long GetNumberOfNonZeroJacobianIndices (void) const
 
virtual unsigned int GetNumberOfParameters (void) const
 
virtual const ParametersTypeGetParameters (void) const
 
virtual void GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const
 
virtual void GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const
 
virtual bool GetUseAddition () const
 
virtual bool GetUseComposition () const
 
virtual bool HasNonZeroJacobianOfSpatialHessian (void) const
 
virtual bool IsLinear (void) const
 
 itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
 
virtual void SetCurrentTransform (CurrentTransformType *_arg)
 
virtual void SetFixedParameters (const ParametersType &fixedParam)
 
virtual void SetInitialTransform (const InitialTransformType *_arg)
 
virtual void SetParameters (const ParametersType &param)
 
virtual void SetParametersByValue (const ParametersType &param)
 
virtual void SetUseAddition (bool _arg)
 
virtual void SetUseComposition (bool _arg)
 
virtual OutputPointType TransformPoint (const InputPointType &point) const
 
- Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
virtual bool GetHasNonZeroJacobianOfSpatialHessian () const
 
virtual void GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const
 
virtual void GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const
 
 itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
 
 itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)
 
- Public Member Functions inherited from elastix::TransformBase< TElastix >
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAllBase (void)
 
virtual int BeforeAllTransformix (void)
 
virtual void BeforeRegistrationBase (void)
 
virtual void ComputeDeterminantOfSpatialJacobian (void) const
 
virtual void ComputeSpatialJacobian (void) const
 
virtual const
CombinationTransformType
GetAsCombinationTransform (void) const
 
virtual CombinationTransformTypeGetAsCombinationTransform (void)
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual const
InitialTransformType
GetInitialTransform (void) const
 
virtual const char * GetTransformParametersFileName () const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void ReadInitialTransformFromFile (const char *transformParameterFileName)
 
virtual void SetFinalParameters (void)
 
virtual void SetInitialTransform (InitialTransformType *_arg)
 
virtual void SetReadWriteTransformParameters (const bool _arg)
 
virtual void SetTransformParametersFileName (const char *filename)
 
virtual void TransformPoints (void) const
 
virtual void TransformPointsAllPoints (void) const
 
virtual void TransformPointsSomePoints (const std::string filename) const
 
virtual void TransformPointsSomePointsVTK (const std::string filename) const
 
virtual void WriteToFile (void) const
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
 
virtual void AfterEachIterationBase (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual int BeforeAll (void)
 
virtual void BeforeEachResolution (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
static Pointer New ()
 

Protected Member Functions

 EulerTransformElastix ()
 
virtual bool ReadCenterOfRotationIndex (InputPointType &rotationPoint) const
 
virtual bool ReadCenterOfRotationPoint (InputPointType &rotationPoint) const
 
virtual ~EulerTransformElastix ()
 
- Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
 AdvancedCombinationTransform ()
 
const JacobianTypeGetJacobianNoCurrentTransform (const InputPointType &point) const
 
void GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
const JacobianTypeGetJacobianNoInitialTransform (const InputPointType &point) const
 
void GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
void GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
virtual void GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
void GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
 
const JacobianTypeGetJacobianUseAddition (const InputPointType &point) const
 
void GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
const JacobianTypeGetJacobianUseComposition (const InputPointType &point) const
 
void GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
 
void GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const
 
void GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const
 
void GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const
 
void GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const
 
void GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
 
void GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
 
void GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const
 
void GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const
 
virtual void NoCurrentTransformSet (void) const throw (ExceptionObject)
 
OutputPointType TransformPointNoCurrentTransform (const InputPointType &point) const
 
OutputPointType TransformPointNoInitialTransform (const InputPointType &point) const
 
OutputPointType TransformPointUseAddition (const InputPointType &point) const
 
OutputPointType TransformPointUseComposition (const InputPointType &point) const
 
virtual void UpdateCombinationMethod (void)
 
virtual ~AdvancedCombinationTransform ()
 
- Protected Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
 AdvancedTransform ()
 
 AdvancedTransform (unsigned int Dimension, unsigned int NumberOfParameters)
 
virtual ~AdvancedTransform ()
 
- Protected Member Functions inherited from elastix::TransformBase< TElastix >
void AutomaticScalesEstimation (ScalesType &scales) const
 
 TransformBase ()
 
virtual ~TransformBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

 EulerTransformElastix (const Self &)
 
void operator= (const Self &)
 

Private Attributes

EulerTransformPointer m_EulerTransform
 

Additional Inherited Members

- Protected Attributes inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
CurrentTransformPointer m_CurrentTransform
 
InitialTransformConstPointer m_InitialTransform
 
GetJacobianFunctionPointer m_SelectedGetJacobianFunction
 
GetJacobianOfSpatialHessianFunctionPointer m_SelectedGetJacobianOfSpatialHessianFunction
 
GetJacobianOfSpatialHessianFunctionPointer2 m_SelectedGetJacobianOfSpatialHessianFunction2
 
GetJacobianOfSpatialJacobianFunctionPointer m_SelectedGetJacobianOfSpatialJacobianFunction
 
GetJacobianOfSpatialJacobianFunctionPointer2 m_SelectedGetJacobianOfSpatialJacobianFunction2
 
GetSparseJacobianFunctionPointer m_SelectedGetSparseJacobianFunction
 
GetSpatialHessianFunctionPointer m_SelectedGetSpatialHessianFunction
 
GetSpatialJacobianFunctionPointer m_SelectedGetSpatialJacobianFunction
 
TransformPointFunctionPointer m_SelectedTransformPointFunction
 
bool m_UseAddition
 
bool m_UseComposition
 
- Protected Attributes inherited from elastix::TransformBase< TElastix >
ParametersType m_FinalParameters
 
std::string m_TransformParametersFileName
 
ParametersTypem_TransformParametersPointer
 

Detailed Description

template<class TElastix>
class elastix::EulerTransformElastix< TElastix >

A transform based on the itk EulerTransforms.

This transform is a rigid body transformation.

The parameters used in this class are:

Parameters:

Transform: Select this transform as follows:
(Transform "EulerTransform")

Scales: the scale factor between the rotations and translations, used in the optimizer.
example: (Scales 200000.0)
example: (Scales 100000.0 60000.0 ... 80000.0)
If only one argument is given, that factor is used for the rotations. If more than one argument is given, then the number of arguments should be equal to the number of parameters: for each parameter its scale factor. If this parameter option is not used, by default the rotations are scaled by a factor of 100000.0. See also the AutomaticScalesEstimation parameter.

AutomaticScalesEstimation: if this parameter is set to "true" the Scales parameter is ignored and the scales are determined automatically.
example: ( AutomaticScalesEstimation "true" )
Default: "false" (for backwards compatibility). Recommended: "true".

CenterOfRotation: an index around which the image is rotated.
example: (CenterOfRotation 128 128 90)
By default the CenterOfRotation is set to the geometric center of the image.

AutomaticTransformInitialization: whether or not the initial translation between images should be estimated as the distance between their centers.
example: (AutomaticTransformInitialization "true")
By default "false" is assumed. So, no initial translation.

AutomaticTransformInitializationMethod: how to initialize this transform. Should be one of {GeometricalCenter, CenterOfGravity}.
example: (AutomaticTransformInitializationMethod "CenterOfGravity")
By default "GeometricalCenter" is assumed.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:

CenterOfRotation: stores the center of rotation as an index.
example: (CenterOfRotation 128 128 90)
depecrated! From elastix version 3.402 this is changed to CenterOfRotationPoint!

CenterOfRotationPoint: stores the center of rotation, expressed in world coordinates.
example: (CenterOfRotationPoint 10.555 6.666 12.345)

Definition at line 72 of file elxEulerTransform.h.

Member Typedef Documentation

Definition at line 144 of file elxEulerTransform.h.

Definition at line 137 of file elxEulerTransform.h.

Definition at line 136 of file elxEulerTransform.h.

template<class TElastix >
typedef SmartPointer<const Self> elastix::EulerTransformElastix< TElastix >::ConstPointer

Definition at line 96 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::CoordRepType elastix::EulerTransformElastix< TElastix >::CoordRepType

Definition at line 140 of file elxEulerTransform.h.

template<class TElastix >
typedef FixedImageType::DirectionType elastix::EulerTransformElastix< TElastix >::DirectionType

Definition at line 153 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::EulerTransformElastix< TElastix >::ElastixPointer

Definition at line 135 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::EulerTransformElastix< TElastix >::ElastixType

Typedef's inherited from TransformBase.

Definition at line 134 of file elxEulerTransform.h.

template<class TElastix >
typedef EulerTransformType::Pointer elastix::EulerTransformElastix< TElastix >::EulerTransformPointer

Definition at line 130 of file elxEulerTransform.h.

template<class TElastix >
typedef EulerTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::EulerTransformElastix< TElastix >::EulerTransformType

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform

Definition at line 93 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::FixedImageType elastix::EulerTransformElastix< TElastix >::FixedImageType

Definition at line 141 of file elxEulerTransform.h.

template<class TElastix >
typedef FixedImageType::IndexType elastix::EulerTransformElastix< TElastix >::IndexType

Other typedef's.

Definition at line 147 of file elxEulerTransform.h.

template<class TElastix >
typedef IndexType::IndexValueType elastix::EulerTransformElastix< TElastix >::IndexValueType

Definition at line 148 of file elxEulerTransform.h.

Definition at line 125 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass1::InputPointType elastix::EulerTransformElastix< TElastix >::InputPointType

Definition at line 121 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass1::InputVectorType elastix::EulerTransformElastix< TElastix >::InputVectorType

Definition at line 123 of file elxEulerTransform.h.

Definition at line 127 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::EulerTransformElastix< TElastix >::ITKBaseType

Definition at line 143 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass1::JacobianType elastix::EulerTransformElastix< TElastix >::JacobianType

Definition at line 119 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::MovingImageType elastix::EulerTransformElastix< TElastix >::MovingImageType

Definition at line 142 of file elxEulerTransform.h.

template<class TElastix >
typedef EulerTransformType::OffsetType elastix::EulerTransformElastix< TElastix >::OffsetType

Definition at line 131 of file elxEulerTransform.h.

Definition at line 126 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass1::OutputPointType elastix::EulerTransformElastix< TElastix >::OutputPointType

Definition at line 122 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass1::OutputVectorType elastix::EulerTransformElastix< TElastix >::OutputVectorType

Definition at line 124 of file elxEulerTransform.h.

Definition at line 128 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass1::ParametersType elastix::EulerTransformElastix< TElastix >::ParametersType

Definition at line 118 of file elxEulerTransform.h.

template<class TElastix >
typedef SmartPointer<Self> elastix::EulerTransformElastix< TElastix >::Pointer

Definition at line 95 of file elxEulerTransform.h.

template<class TElastix >
typedef FixedImageType::PointType elastix::EulerTransformElastix< TElastix >::PointType

Definition at line 150 of file elxEulerTransform.h.

template<class TElastix >
typedef FixedImageType::RegionType elastix::EulerTransformElastix< TElastix >::RegionType

Definition at line 152 of file elxEulerTransform.h.

Definition at line 139 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::RegistrationType elastix::EulerTransformElastix< TElastix >::RegistrationType

Definition at line 138 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass1::ScalarType elastix::EulerTransformElastix< TElastix >::ScalarType

Typedefs inherited from the superclass. These are both in Euler2D and Euler3D.

Definition at line 117 of file elxEulerTransform.h.

template<class TElastix >
typedef Superclass2::ScalesType elastix::EulerTransformElastix< TElastix >::ScalesType

For scales setting in the optimizer

Definition at line 160 of file elxEulerTransform.h.

template<class TElastix >
typedef EulerTransformElastix elastix::EulerTransformElastix< TElastix >::Self

Standard ITK-stuff.

Definition at line 81 of file elxEulerTransform.h.

template<class TElastix >
typedef FixedImageType::SizeType elastix::EulerTransformElastix< TElastix >::SizeType

Definition at line 149 of file elxEulerTransform.h.

template<class TElastix >
typedef FixedImageType::SpacingType elastix::EulerTransformElastix< TElastix >::SpacingType

Definition at line 151 of file elxEulerTransform.h.

template<class TElastix >
typedef AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::EulerTransformElastix< TElastix >::Superclass1

Definition at line 85 of file elxEulerTransform.h.

template<class TElastix >
typedef elx::TransformBase< TElastix > elastix::EulerTransformElastix< TElastix >::Superclass2

Definition at line 87 of file elxEulerTransform.h.

template<class TElastix >
typedef TransformInitializerType::Pointer elastix::EulerTransformElastix< TElastix >::TransformInitializerPointer

Definition at line 157 of file elxEulerTransform.h.

template<class TElastix >
typedef CenteredTransformInitializer< EulerTransformType, FixedImageType, MovingImageType> elastix::EulerTransformElastix< TElastix >::TransformInitializerType

Definition at line 156 of file elxEulerTransform.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::EulerTransformElastix< TElastix >::EulerTransformElastix ( )
protected

The constructor.

template<class TElastix >
virtual elastix::EulerTransformElastix< TElastix >::~EulerTransformElastix ( )
inlineprotectedvirtual

The destructor.

Definition at line 210 of file elxEulerTransform.h.

template<class TElastix >
elastix::EulerTransformElastix< TElastix >::EulerTransformElastix ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::EulerTransformElastix< TElastix >::BeforeRegistration ( void  )
virtual

Execute stuff before the actual registration:

  • Call InitializeTransform
  • Set the scales.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::EulerTransformElastix< TElastix >::elxClassNameMacro ( "EulerTransform"  )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "EulerTransform")

template<class TElastix >
virtual const char* elastix::EulerTransformElastix< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >
virtual void elastix::EulerTransformElastix< TElastix >::InitializeTransform ( void  )
virtual

Initialize Transform.

  • Set all parameters to zero.
  • Set center of rotation: automatically initialized to the geometric center of the image, or assigned a user entered voxel index, given by the parameter (CenterOfRotation <index-x> <index-y> ...); If an initial transform is present and HowToCombineTransforms is set to "Compose", the initial transform is taken into account while setting the center of rotation.
  • Set initial translation: the initial translation between fixed and moving image is guessed, if the user has set (AutomaticTransformInitialization "true").

It is not yet possible to enter an initial rotation angle.

template<class TElastix >
elastix::EulerTransformElastix< TElastix >::itkStaticConstMacro ( SpaceDimension  ,
unsigned  int,
Superclass2::FixedImageDimension   
)

Dimension of the fixed image.

template<class TElastix >
static Pointer elastix::EulerTransformElastix< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::EulerTransformElastix< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
virtual bool elastix::EulerTransformElastix< TElastix >::ReadCenterOfRotationIndex ( InputPointType rotationPoint) const
protectedvirtual

Try to read the CenterOfRotation from the transform parameter file This is an index value, and, thus, converted to world coordinates. Transform parameter files generated by elastix version < 3.402 saved the center of rotation in this way.

template<class TElastix >
virtual bool elastix::EulerTransformElastix< TElastix >::ReadCenterOfRotationPoint ( InputPointType rotationPoint) const
protectedvirtual

Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates. Transform parameter files generated by elastix version > 3.402 save the center of rotation in this way.

template<class TElastix >
virtual void elastix::EulerTransformElastix< TElastix >::ReadFromFile ( void  )
virtual

Function to read transform-parameters from a file.

It reads the center of rotation and calls the superclass' implementation.

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >
virtual void elastix::EulerTransformElastix< TElastix >::SetScales ( void  )
virtual

Set the scales

  • If AutomaticScalesEstimation is "true" estimate scales
  • If scales are provided by the user use those,
  • Otherwise use some default value This function is called by BeforeRegistration, after the InitializeTransform function is called
template<class TElastix >
virtual void elastix::EulerTransformElastix< TElastix >::WriteToFile ( const ParametersType param) const
virtual

Function to write transform-parameters to a file. It writes the center of rotation to file and calls the superclass' implementation.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

template<class TElastix >
EulerTransformPointer elastix::EulerTransformElastix< TElastix >::m_EulerTransform
private

Definition at line 233 of file elxEulerTransform.h.



Generated on 27-06-2013 for elastix by doxygen 1.8.3.1 elastix logo