Author: | Kjell Magne Fauske |
---|---|
Version: | 2.0.3 |
Licence: | MIT |
dot2tex is a tool for converting graphs generated by Graphviz to formats suitable for use with LaTeX. Currently dot2tex can generate code for use with PSTricks and PGF/TikZ.
The purpose of dot2tex is to give graphs a more LaTeX look and feel. This is accomplished by:
The following software and modules are required to run dot2tex:
Users have reported problems using dot2tex with old versions of pyparsing and Graphviz.
Dot2tex was developed and tested using Python 2.4. However, dot2tex will probably run fine using Python 2.3.
Syntax:
dot2tex.py [options] [inputfile]
Input data is read from standard input if no input file is specified. Output is written to standard output unless a destination file is set with the -o option.
Dot2tex relies on the xdot format generated by Graphviz. Dot2tex will automatically try to convert an input file in the plain dot format to this format, but it is recommended to feed xdot data directly to dot2tex due to some limitations in the pydot module.
A few examples on how to invoke dot2tex:
Read a file from standard input and write the result to the file test.tex:
$ dot -Txdot test.dot | dot2tex.py > test.tex $ neato -Txdot -Gstart=rand test.dot | dot2tex.py > test.tex
Load test.dot, convert it to xdot format and output the resulting graph using PGF/TikZ to testpgf.tex:
$ dot2tex.py -fpgf test.dot > testpgf.tex
Note
Windows users you have to type python dot2tex.py to invoke the program. If you find this annoying, try the ExeMaker tool from effbot.org.
The following options are available:
-h, --help | Display help message. |
-f fmt, --format fmt | |
Set output format. The following values of fmt are supported:
| |
-t mode, --texmode mode | |
Text mode. Specify how text is converted.
Note that you can locally override the text mode by assigning a special texlbl attribute to a graph element, or by using the texmode attribute. | |
-s, --straightedges | |
Draw edges using straight lines. Graphviz uses bezier curves to draw straight edges. Use this option to force the use of line to operations instead of curves. Does not work in duplicate mode. | |
-o filename, --output filename | |
Write output to file. | |
-d, --duplicate | |
Duplicate the xdot output. Uses the drawing information embedded in the xdot output to draw nodes and edges. | |
--template filename | |
Use template from file. See the templates section for more details. | |
-V, --version | Print version information and exit. |
-w, --switchdraworder | |
Switch drawing order of nodes and edges. By default edges are drawn before nodes. | |
-c, --crop | Use preview.sty to crop the graph. Currently only implemented for the PGF/TikZ output format. |
--figonly | Output the graph without a document preamble. Useful if the graph is to be included in a master document. |
--preproc | Preprocess the graph through LaTeX using the preview package. Will generate a new dot file where the height and widths of nodes and edge labels are set based on the results from preview. |
--usepdflatex | Use pdflatex instead of latex for preprocessing the graph. |
--nominsize | Ignore minimum node sizes during preprocessing. |
--valignmode mode | |
Vertical alignment of node labels, where mode can have the values:
| |
--alignstr | Used to pass a default alignment string to the PSTricks \rput command: \rput[alignstr] ... Only works for the PSTricks format. PGF/TikZ users can instead pass an anchor=... style using the graphstyle option. |
--debug | Write detailed debug information to the file dot2tex.log in the current directory. |
The following options are used by the output templates.
-e encoding, --encoding encoding | |
Set text encoding. Supported encodings are:
| |
--docpreamble TeXcode | |
Insert TeX code in the document preamble. | |
--figpreamble TeXcode | |
Insert TeX code in the figure preamble. | |
--figpostamble TeXcode | |
Insert TeX code in the figure postamble. | |
--graphstyle style | |
Sets the <<graphstyle>> tag. | |
--margin margin | |
Set margin around the graph when using preview.sty. margin must be a valid TeX unit. By default margin is set to 0pt. |
The output format is specified with the -f fmt or --format fmt command line option.
This is the default output format. Generates code for the Portable Graphics Format (PGF) package . Mixes both PGF and TikZ commands.
Not implemented yet. This purpose of the TikZ output format is to use TikZ' node and edge commands, instead of relying on the xdot draw commands. This will allow tighter integration with PGF/TikZ and better visual results.
The main purpose of dot2tex is to allow text and labels to be typeset by LaTeX. Labels are treated differently according to the current TeX mode:
The TeX mode can be set on the command line using the -t option. It can also be set locally in a graph by using the special texmode attribute.
You can also use the special texlbl attribute on a graph element. If a texlbl attribute is found, it will be used regardless of the current text mode.
Note
The \ character needs to be escaped with \\ if used in the label attribute.
Note that only position and alignment information is converted. Any font information is lost. This may result in some odd behavior. Some tweaking may be necessary to get it right.
Note
If you use texlbl for edges, you have to provide a dummy label attribute. Otherwise Graphviz will not generate the necessary code for placing edge labels.
Consider the following graph:
digraph G {
a_1-> a_2 -> a_3 -> a_1;
}
Converting the graph using:
$ dot2tex.py -tmath ex1.dot > ex1.tex
gives the result shown in the left hand side of the figure below. The default rendering is shown to the right. Using the raw mode will result in a compilation error because of the underscore character.
Example of using texlbl:
digraph G {
a_1 [texlbl="$\frac{\gamma}{x^2}$"];
a_1-> a_2 -> a_3 -> a_1;
}
Example of using the texmode attribute:
digraph G {
a_1 [texlbl="$\frac{\gamma}{2x^2+y^3}$"];
a_1 -> a_2 -> a_3 -> a_1
node [texmode="math"];
a_1 -> b_1 -> b_2 -> a_3;
b_1 [label="\\frac{\\gamma}{x^2}"];
node [texmode="verbatim"]
b_4 [label="\\beta"]
a_3 -> b_4 -> a_1;d
}
The above example shows two important things:
Preprocessing the above graph with:
$ dot2tex.py --preproc ex4.dot | dot2tex.py > ex4.tex
gives correctly sized nodes:
A problem with using LaTeX for typesetting node and edge labels, is that Graphviz does not know the sizes of the resulting labels. To circumvent this problem, you can use the --preproc option. The following will then happen:
Widths and heights of nodes are handled the in same way as Graphviz does it. The width and height attributes set the minimum size of the node. If label size + margins is larger that the minimum size, the node size will grow accordingly. Default values are width=0.75in and height=0.5in.
Node margins are set using the margin attribute. This also works for edge labels. margin==value sets both the horizontal and vertical margin to value, margin=="hvalue,vvalue" sets the horizontal and vertical margins respectively.
Note that all sizes are given in inches.
If you do not want a minimum node size, you can use the '--nominsize' option. Dot2tex will then use size of label + margins as node size.
Nodes with fixedsize=True attributes are not processed.
Consider the following graph:
digraph G {
node [shape=circle];
a_1 [texlbl="$x^2+\frac{\sin y}{y^2+\cos \beta}+\gamma_3$"];
a_1 -> a_2 [label=" ", texlbl="$x_1+x_3^2+z+c+v~~$"];
a_2 -> a_1;
}
Rendered with:
$ dot2tex -tmath example.dot > example.tex
the graph will look like this:
You could improve the result by adding a longer label attribute or setting a fixed width. A better solution is to preprocess the graph like this:
$ dot2tex.py -tmath --preproc example.dot > exampletmp.dot $ dot2tex.py exampletmp.dot > example.tex
You can also chain the commands:
$ dot2tex.py -tmath --preproc example.dot | dot2tex.py > example.tex
The resulting graph now has correctly sized nodes and edge labels:
Modifying node sizes using the widht/height and margin attributes can be a bit counterintuitive. A few examples will hopefully make it clearer:
digraph G {
node [shape=rectangle];
a_1 [margin="0"];
a_2 [margin="0.7,0.4"];
a_3 [width="2",height="1"];
a_1-> a_2 -> a_3 -> a_1;
}
Processing the graph with:
$ dot2tex.py -tmath --preproc example.dot | dot2tex.py > example.tex
gives
Setting the margin of a_1 to 0 has no effect because of the minimum node width. Processing the graph with:
$ dot2tex.py -tmath --preproc --nominwidth example.dot | dot2tex.py > example.tex
gives a different graph, where only label widths and margins affect the node sizes:
Dot2tex relies on the xdot format for drawing nodes and placing node labels. The fonts that Graphviz and LaTeX use are different, so using the label coordinates from Graphviz does not always give good results. Dot2tex's default behavior is to place node labels in the middle of the node. However, you can change this behavior by setting the valignmode option to dot. Labels will then be placed using the coordinates supplied by Graphviz.
Here is an example graph where it is necessary to use the valignmode option:
digraph G {
node0 [label="{left|right}", shape=record];
node1 [shape=rectangle, label="node 1"];
node0 -> node1;
rankdir=LR;
}
For record nodes dot2tex has to use Graphviz coordinates. This is shown in the following figure rendered with:
$ dot2tex.py valign.dot
To get the same vertical alignment for both nodes, you can use:
$ dot2tex.py --valignmode=dot valign.dot
Now the labels are aligned, but the labels are still placed too low. The reason for this is that both PSTricks and PGF by default centers text vertically on the current coordinate. The alignment point should in this case be set to the baseline. For PGF/TikZ you can use the --graphstyle option like this:
$ dot2tex.py --valignmode=dot --graphstyle="anchor=base" valign.dot
PSTricks users have to use the --alingstr option:
$ dot2tex.py --valignmode=dot --alignstr=B valign.dot
The result is better, but to get even better alignment you have to change the node font size. Graphviz' default font size is 14pt, which is larger than the typical 10pt or 11pt used in LaTeX documents. By changing the node font size to 10pt we can trick Graphviz to give us a better alignment:
digraph G {
node [fontsize=10];
node0 [label="{left|right}", shape=record];
node1 [shape=rectangle, label="node 1"];
node0 -> node1;
rankdir=LR;
}
All Graphviz color formats are supported, including the RGBA format. Transparency will however only work when using the PGF/TikZ output format.
Named colors are supported, but you have to ensure that the colors are defined in the resulting LaTeX file. The default PSTricks and PGF/TikZ templates load the X11names color scheme defined in the xcolor package. Note that color names in the xcolor package are case sensitive. This is not the case with Graphviz's color names. Use CamelCase names in your graphs to ensure compatibility with xcolor.
For convenience, a color definition file gcols.tex is distributed with dot2tex. You can find it in the examples directory. This file defines most of Graphviz's named colors as lower case. Include this file in the preamble if you need it.
Dot2tex offers a few ways of modifying the generated output.
The dot language defines the style attribute that can be used to modify the appearance of graphs, nodes, and edges. The style attribute is passed to the rendering backend, and is a powerful and flexible way of customizing the look and feel of your graphs. Using styles requires detailed knowledge of the output format.
The following example shows how interesting visual results can be achieved with the PGF/TikZ output format. The styles are PGF/TikZ specific. See the user guide for details:
graph G {
node [shape=circle, fixedsize=True, width="0.2",
style="ball color =green", label=""];
edge [style="snake=zigzag, green"];
a_1 -- c -- a_2;
c [style="ball color=black"];
edge [style="snake=snake, blue"];
node [style="ball color = red", label=""];
a_3 -- c -- a_4 --a_3;
}
The snake styles only work on straight lines. We therefore have to use the -s option. fdp is used to lay out the graph:
$ fdp -TXdot ball.dot | dot2tex.py -fpgf -s > balls.tex
The resulting graph is shown below.
Note
Use the straight edge option -s to force the use of straight lines. Otherwise curves will be used to draw even straight lines.
The style attribute can be used to change arrow types. A PGF/TikZ example:
digraph G {
graph [mindist=0.5];
node [fixedsize=true, shape=circle, width=0.4, style="fill=green!20"];
c -> n_1 [style="-stealth"];
c -> n_2 [style="-to"];
c -> n_3 [style="-latex"];
c -> n_4 [style="-diamond"];
c -> n_5 [style="-o"];
c -> n_6 [style="{-]}"];
c -> n_7 [style="-triangle 90"];
c -> n_8 [style="-hooks"];
c -> n_9 [style="->>"];
c [style="fill=red!80"];
}
Rendered with:
$ circo -Txdot pgfarrows.dot | dot2tex.py -fpgf > pgfarrows.tex
You can also set the default arrow style by using the --graphstyle option or d2tgraphstyle attribute:
$ dot2tex.py -tmath --graphstyle=">=diamond" ex1.dot > ex1gstyle.tex
A PSTricks example:
digraph G {
d2tdocpreamble="\usepackage{pstricks-add}";
graph [mindist=0.5];
node [texmode="math", fixedsize=true, shape=circle, width=0.4];
c -> n_1 [style="arrows=->"];
c -> n_2 [style="arrows=->>"];
c -> n_3 [style="arrows=-<"];
c -> n_4 [style="arrows=-*"];
c -> n_5 [style="arrows=-{]}"];
c -> n_6 [style="arrows=-o"];
c -> n_7 [style="arrows=-H"];
c -> n_8 [style="arrows=->];
}
Rendered with:
$ circo -Txdot pstarrows.dot | dot2tex.py -fpst > pstarrows.tex
The above example shows how the d2tdocpreamble attribute can be used to load additional LaTeX packages. You could also use the `--docpreamble option:
$ ... | dot2tex.py -fpst --docpreamble="\usepackage{pstricks-add}" ...
The output from dot2tex is a list of drawing commands. To render the graphics with LaTeX there's a need for some boiling plate code. This code can be customized using simple templates. If no template is specified with the -t option, a default template will be used.
The following template tags are available:
Bounding box. Example: (0bp,0bp)(100bp,100bp) The individual parts of the bounding box are available with the tags:
Note that the bounding box parts are given without any units.
Three different templates are used by dot2tex for the preprocessing mode, output mode and figure only mode respectively. The following template tags make it possible to use the same template file for all modes.
Note
Tags that have no value are replaced with an empty string. Insert a % character after a template tag to avoid unwanted line breaks.
\documentclass{article}
\usepackage[x11names, rgb]{xcolor}
\usepackage[<<textencoding>>]{inputenc}
\usepackage{tikz}
\usetikzlibrary{snakes,arrows,shapes}
\usepackage{amsmath}
<<startpreprocsection>>%
\usepackage[active,auctex]{preview}
<<endpreprocsection>>%
<<gvcols>>%
<<cropcode>>%
<<docpreamble>>%
\begin{document}
\pagestyle{empty}
%
<<startpreprocsection>>%
<<preproccode>>
<<endpreprocsection>>%
%
<<startoutputsection>>
\enlargethispage{100cm}
% Start of code
% \begin{tikzpicture}[anchor=mid,>=latex',join=bevel,<<graphstyle>>]
\begin{tikzpicture}[>=latex',join=bevel,<<graphstyle>>]
\pgfsetlinewidth{1bp}
<<figpreamble>>%
<<drawcommands>>
<<figpostamble>>%
\end{tikzpicture}
% End of code
<<endoutputsection>>
%
\end{document}
%
<<startfigonlysection>>
\begin{tikzpicture}[>=latex,join=bevel,<<graphstyle>>]
\pgfsetlinewidth{1bp}
<<figpreamble>>%
<<drawcommands>>
<<figpostamble>>%
\end{tikzpicture}
<<endfigonlysection>>
The <<cropcode>> template tag is available when the --preview option is used. The contents will then be:
\usepackage[active,tightpage]{preview}
\PreviewEnvironment{tikzpicture}
\setlength\PreviewBorder{<<margin>>}
\documentclass{article}
% <<bbox>>
\usepackage[x11names]{xcolor}
\usepackage[<<textencoding>>]{inputenc}
\usepackage{graphicx}
\usepackage{pstricks}
\usepackage{amsmath}
<<startpreprocsection>>%
\usepackage[active,auctex]{preview}
<<endpreprocsection>>%
<<gvcols>>%
<<docpreamble>>%
\begin{document}
\pagestyle{empty}
<<startpreprocsection>>%
<<preproccode>>%
<<endpreprocsection>>%
<<startoutputsection>>%
\enlargethispage{100cm}
% Start of code
\begin{pspicture}[linewidth=1bp<<graphstyle>>]<<bbox>>
\pstVerb{2 setlinejoin} % set line join style to 'mitre'
<<figpreamble>>%
<<drawcommands>>
<<figpostamble>>%
\end{pspicture}
% End of code
<<endoutputsection>>%
\end{document}
%
<<startfigonlysection>>
\begin{pspicture}[linewidth=1bp<<graphstyle>>]<<bbox>>
\pstVerb{2 setlinejoin} % set line join style to 'mitre'
<<figpreamble>>%
<<drawcommands>>
<<figpostamble>>%
\end{pspicture}
<<endfigonlysection>>
Dot2tex defines several special graph, node and edge attributes. Most of them are not part of the DOT language.
Used to pass a default alignment string to the PSTricks \rput command:
\rput[d2talignstr] ...
The purpose of dot2tex is to give graphs a more LaTeX friendly look, not to create exact duplicates. However, the program does a descent duplication job when it comes to drawing nodes and edges, but it does not try to duplicate label and annotation formatting.
A list of known limitations:
Parallel edges are only supported in the duplicate mode.
Background color of page is currently not set.
The fontcolor attribute is not supported yet.
The setlinewidth(.) attribute is not supported yet.
Pydot/Pyparsing have some problems with the HTML syntax.
Pydot/Pyparsing sometimes choke on valid dot files. If this happen you could try to feed xdot data directly to dot2tex like this:
$ dot -Txdot example.dot | dot2tex.py -o example.tex
Graphviz's default text encoding is utf8. The latin1 encoding can also be used. Utf8 is an unicode encoding and can in theory handle any international characters. However, LaTeX's unicode support is somewhat limited.
No font information in the DOT file is preserved by dot2tex. However, there are several ways of modifying the generated LaTeX code to achieve some control of fonts and font sizes.
To increase the font size you can for instance insert a \Huge command in the figure preamble:
$ dot2tex.py -tmath --figpreamble="\Huge" ex1.dot > ex1huge.tex
When making your own templates it is easy to make mistakes, and LaTeX markup in graphs may fail to compile. To make it easier to find errors, invoke dot2tex with the --debug option:
$ dot2tex.py --preproc --debug test.dot
A dot2tex.log file will then be generated with detailed information. In the log file you will find the generated LaTeX code, as well as well as the compilation log.
Be aware of differences between the template you use for preprocessing and code used to generate final output. This is especially important if you use the --figonly option and include the code in a master document. If a 10pt font is used during preprocessing, the result may not be optimal if a 12pt font is used in the final output.
Example. A graph is generated with:
$ dot2tex.py --preproc -tmath --nominsize ex1.dot > ex1tmp.dot
Running through dot2tex again with:
$ dot2tex.py figpreamble="\Huge" ex1tmp.dot > ex1huge.tex
gives labels that do not fit inside the nodes.