- p -
- paintEngine()
: BALL::VIEW::GLOffscreenTarget
- paintEvent()
: BALL::VIEW::GLRenderWindow
, BALL::VIEW::SDWidget
, BALL::VIEW::Scene
- paintGL()
: BALL::VIEW::Scene
- Pair6_12InteractionEnergyProcessor()
: BALL::Pair6_12InteractionEnergyProcessor
- Pair6_12RDFIntegrator()
: BALL::Pair6_12RDFIntegrator
- PairExpInteractionEnergyProcessor()
: BALL::PairExpInteractionEnergyProcessor
- PairExpRDFIntegrator()
: BALL::PairExpRDFIntegrator
- Parameters()
: BALL::Parameters
- ParameterSection()
: BALL::ParameterSection
- parse()
: BALL::ExpressionParser
, BALL::GAFFCESParser
, BALL::SmartsParser
, BALL::SmilesParser
- parse_()
: BALL::ConnectedToPredicate
, BALL::BindingPocketProcessor
- parseAtoms_()
: BALL::FragmentDB
- parseAtomtypeTableFile_()
: BALL::GAFFTypeProcessor
- parseBonds_()
: BALL::FragmentDB
- parseColumnFormat()
: BALL::LineBasedFile
- parseDelete_()
: BALL::FragmentDB
- ParsedFunction()
: BALL::ParsedFunction< arg >
- ParsedFunctionDialog()
: BALL::VIEW::ParsedFunctionDialog
- ParseError()
: BALL::Exception::ParseError
- parseESummaryXml_()
: BALL::VIEW::PubChemDialog
- parseItemRecursive_()
: BALL::VIEW::PubChemDialog
- parseLine()
: BALL::PDBFile
- parseLine_()
: BALL::VIEW::PyWidget
- parseProperties_()
: BALL::FragmentDB
- parseRecordANISOU()
: BALL::PDBFile
- parseRecordATOM()
: BALL::PDBFile
- parseRecordAUTHOR()
: BALL::PDBFile
- parseRecordCAVEAT()
: BALL::PDBFile
- parseRecordCISPEP()
: BALL::PDBFile
- parseRecordCOMPND()
: BALL::PDBFile
- parseRecordCONECT()
: BALL::PDBFile
- parseRecordCRYST1()
: BALL::PDBFile
- parseRecordDBREF()
: BALL::PDBFile
- parseRecordEND()
: BALL::PDBFile
- parseRecordENDMDL()
: BALL::PDBFile
- parseRecordEXPDTA()
: BALL::PDBFile
- parseRecordFORMUL()
: BALL::PDBFile
- parseRecordFTNOTE()
: BALL::PDBFile
- parseRecordHEADER()
: BALL::PDBFile
- parseRecordHELIX()
: BALL::PDBFile
- parseRecordHET()
: BALL::PDBFile
- parseRecordHETATM()
: BALL::PDBFile
- parseRecordHETNAM()
: BALL::PDBFile
- parseRecordHETSYN()
: BALL::PDBFile
- parseRecordHYDBND()
: BALL::PDBFile
- parseRecordJRNL()
: BALL::PDBFile
- parseRecordKEYWDS()
: BALL::PDBFile
- parseRecordLINK()
: BALL::PDBFile
- parseRecordMASTER()
: BALL::PDBFile
- parseRecordMODEL()
: BALL::PDBFile
- parseRecordMODRES()
: BALL::PDBFile
- parseRecordMTRIX1()
: BALL::PDBFile
- parseRecordMTRIX2()
: BALL::PDBFile
- parseRecordMTRIX3()
: BALL::PDBFile
- parseRecordOBSLTE()
: BALL::PDBFile
- parseRecordORIGX1()
: BALL::PDBFile
- parseRecordORIGX2()
: BALL::PDBFile
- parseRecordORIGX3()
: BALL::PDBFile
- parseRecordREMARK()
: BALL::PDBFile
- parseRecordREVDAT()
: BALL::PDBFile
- parseRecordSCALE1()
: BALL::PDBFile
- parseRecordSCALE2()
: BALL::PDBFile
- parseRecordSCALE3()
: BALL::PDBFile
- parseRecordSEQADV()
: BALL::PDBFile
- parseRecordSEQRES()
: BALL::PDBFile
- parseRecordSHEET()
: BALL::PDBFile
- parseRecordSIGATM()
: BALL::PDBFile
- parseRecordSIGUIJ()
: BALL::PDBFile
- parseRecordSITE()
: BALL::PDBFile
- parseRecordSLTBRG()
: BALL::PDBFile
- parseRecordSOURCE()
: BALL::PDBFile
- parseRecordSPRSDE()
: BALL::PDBFile
- parseRecordSSBOND()
: BALL::PDBFile
- parseRecordTER()
: BALL::PDBFile
- parseRecordTITLE()
: BALL::PDBFile
- parseRecordTURN()
: BALL::PDBFile
- parseRecordTVECT()
: BALL::PDBFile
- parseRename_()
: BALL::FragmentDB
- PartialChargeBase()
: BALL::PartialChargeBase
- PartialChargeProcessor()
: BALL::PartialChargeProcessor
- partitionFreeSingularEdge()
: BALL::SESTriangulator
- partitionNonFreeSingularEdge()
: BALL::SESTriangulator
- partitionOfCircle()
: BALL::SESTriangulator
- partitionSingularEdge()
: BALL::SESTriangulator
- partitionSingularEdges()
: BALL::SESTriangulator
- partner1Chosen()
: BALL::VIEW::DockDialog
- partner2Chosen()
: BALL::VIEW::DockDialog
- paste()
: BALL::VIEW::MolecularControl
, BALL::VIEW::PyWidget
- pasteAllowedFor_()
: BALL::VIEW::MolecularControl
- Path()
: BALL::Path
- path()
: BALL::FileSystem
- pause()
: BALL::DockingAlgorithm
- pauseClicked()
: BALL::VIEW::DockProgressDialog
- pauseRendering()
: BALL::VIEW::RenderSetup
- PCMCavFreeEnergyProcessor()
: BALL::PCMCavFreeEnergyProcessor
- PDBAtom()
: BALL::PDBAtom
- PDBAtomIteratorTraits()
: BALL::PDBAtomIteratorTraits
- PDBFile()
: BALL::PDBFile
- PDBInfo()
: BALL::PDBInfo
- PDBRecords()
: BALL::PDBRecords
- Peak()
: BALL::Peak< PositionType >
- Peak_()
: BALL::GeometricFit::Peak_
- PeakList()
: BALL::PeakList< PT >
- pentakisDodecaeder()
: BALL::TriangulatedSphere
- peptide_()
: BALL::Peptides::PeptideBuilder
- PeptideBuilder()
: BALL::Peptides::PeptideBuilder
- PeptideDialog()
: BALL::VIEW::PeptideDialog
- performAStarStep_()
: BALL::AssignBondOrderProcessor
- performBranchAndBound_()
: BALL::AssignBondOrderProcessor
- performGreedy_()
: BALL::AssignBondOrderProcessor
- PeriodicBoundary()
: BALL::PeriodicBoundary
- periodicBoundaryClicked()
: BALL::VIEW::AmberConfigurationDialog
, BALL::VIEW::CharmmConfigurationDialog
- permuteComponentSigns_()
: BALL::PolarSolvation
- PersistenceManager()
: BALL::PersistenceManager
- PersistentObject()
: BALL::PersistentObject
- persistentRead()
: BALL::Composite
, BALL::PersistentObject
, BALL::NamedProperty
, BALL::Atom
, BALL::AtomContainer
, BALL::Bond
, BALL::Chain
, BALL::Fragment
, BALL::Molecule
, BALL::NucleicAcid
, BALL::Nucleotide
, BALL::PDBAtom
, BALL::Protein
, BALL::Residue
, BALL::SecondaryStructure
, BALL::System
, BALL::TVector2< T >
- persistentWrite()
: BALL::Composite
, BALL::PersistentObject
, BALL::NamedProperty
, BALL::Atom
, BALL::AtomContainer
, BALL::Bond
, BALL::Chain
, BALL::Fragment
, BALL::Molecule
, BALL::NucleicAcid
, BALL::Nucleotide
, BALL::PDBAtom
, BALL::Protein
, BALL::Residue
, BALL::SecondaryStructure
, BALL::System
, BALL::TVector2< T >
- phase()
: BALL::TFFT1D< ComplexTraits >
, BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- phe_pressed()
: BALL::VIEW::PeptideDialog
- pickingMode_()
: BALL::VIEW::Scene
- pickObjects()
: BALL::VIEW::RenderSetup
- pickObjects1()
: BALL::VIEW::GLRenderer
- pickObjects2()
: BALL::VIEW::GLRenderer
- pickParent_()
: BALL::VIEW::Scene
- PiecewiseFunction()
: BALL::PiecewiseFunction
- PiecewisePolynomial()
: BALL::PiecewisePolynomial
- PierottiCavFreeEnergyProcessor()
: BALL::PierottiCavFreeEnergyProcessor
- PixelFormat()
: BALL::VIEW::PixelFormat
- PixmapItem()
: BALL::VIEW::CanvasWidget::PixmapItem
- planarAtom_()
: BALL::GAFFTypeProcessor
- plot()
: BALL::VIEW::DockableRegularData1DWidget
, BALL::VIEW::DockableRegularData2DWidget
, BALL::VIEW::SDWidget
- pluginChanged()
: BALL::VIEW::PluginDialog
- PluginDialog()
: BALL::VIEW::PluginDialog
- PluginManager()
: BALL::PluginManager
- PluginModel()
: BALL::VIEW::PluginModel
- pluginsLoaded()
: BALL::VIEW::PluginModel
- Point()
: BALL::VIEW::Point
- polarColorPressed()
: BALL::VIEW::ColoringSettingsDialog
- PolarSolvation()
: BALL::PolarSolvation
- PolarVdWSurface()
: BALL::PolarVdWSurface
- pop()
: BALL::ResourceEntry::IteratorTraits_
- pop_back()
: BALL::PDBRecords
- popRepresentationToUpdate()
: BALL::VIEW::RepresentationManager
- PositionColorProcessor()
: BALL::VIEW::PositionColorProcessor
- positionTypeChanged()
: BALL::VIEW::LightSettings
- positiveChargeColorPressed()
: BALL::VIEW::ColoringSettingsDialog
- PositivePolarVdWSurface()
: BALL::PositivePolarVdWSurface
- PositiveVdWSurface()
: BALL::PositiveVdWSurface
- Postcondition()
: BALL::Exception::Postcondition
- postProcessAtomTypes_()
: BALL::GAFFTypeProcessor
- postprocessHelices_()
: BALL::PDBFile
- postprocessRandomCoils_()
: BALL::PDBFile
- postprocessSheetsTurns_()
: BALL::PDBFile
- postprocessSSBonds_()
: BALL::PDBFile
- Potential1210()
: BALL::Potential1210
- POVColorRGBA()
: BALL::VIEW::POVRenderer
- POVFinish()
: BALL::VIEW::POVRenderer
- POVRenderer()
: BALL::VIEW::POVRenderer
- POVVector3()
: BALL::VIEW::POVRenderer
- PQ_Entry_()
: BALL::AssignBondOrderProcessor::PQ_Entry_
- preassignPenaltyClasses_()
: BALL::AssignBondOrderProcessor
- PreciseTime()
: BALL::PreciseTime
- precisionBoxChanged()
: BALL::VIEW::DisplayProperties
- precisionSliderChanged()
: BALL::VIEW::DisplayProperties
- precomputeAtomProperties_()
: BALL::GAFFTypeProcessor
- precomputeBondLengthPenalties_()
: BALL::AssignBondOrderProcessor
- precomputeBondProperties_()
: BALL::GAFFTypeProcessor
- preComputeBonds_()
: BALL::HBondProcessor
- Precondition()
: BALL::Exception::Precondition
- Preferences()
: BALL::VIEW::Preferences
- PreferencesEntry()
: BALL::VIEW::PreferencesEntry
- PreferencesObject()
: BALL::PreferencesObject
- prepareBufferedRendering()
: BALL::VIEW::BufferedRenderer
- prepareGridTextures()
: BALL::VIEW::Scene
, BALL::VIEW::RenderSetup
- prepareRendering()
: BALL::VIEW::RenderWindow< taPixelDatatype >
, BALL::VIEW::GLOffscreenTarget
, BALL::VIEW::RenderTarget
- prepareUpscaling()
: BALL::VIEW::GLOffscreenTarget
- prepend()
: BALL::Molecule
, BALL::AtomContainer
, BALL::Chain
, BALL::Molecule
, BALL::Nucleotide
, BALL::Residue
, BALL::System
, BALL::Residue
, BALL::Molecule
, BALL::Chain
, BALL::SecondaryStructure
, BALL::Chain
, BALL::SecondaryStructure
, BALL::Nucleotide
- prependChild()
: BALL::Composite
- preProcessing()
: BALL::RSComputer
, BALL::SESComputer
, BALL::SolventAccessibleSurface
, BALL::SESTriangulator
- PrincipalMomentOfInertia()
: BALL::PrincipalMomentOfInertia
- PrincipalMomentOfInertiaX()
: BALL::PrincipalMomentOfInertiaX
- PrincipalMomentOfInertiaY()
: BALL::PrincipalMomentOfInertiaY
- PrincipalMomentOfInertiaZ()
: BALL::PrincipalMomentOfInertiaZ
- print()
: BALL::VIEW::PixelFormat
- printAPS()
: BALL::GAFFCESParser::APSMatcher
- printCursorPosition_()
: BALL::VIEW::PyWidget
- printEnergy()
: BALL::EnergyMinimizer
- printScene()
: BALL::VIEW::Scene
- printSelectionInfos()
: BALL::VIEW::MainControl
- printUCK()
: BALL::UCK
- pro_pressed()
: BALL::VIEW::PeptideDialog
- probeIntersection()
: BALL::SESSingularityCleaner
- probeRadiusChanged()
: BALL::VIEW::ModelSettingsDialog
- proceed()
: BALL::DockingAlgorithm
- processEvent_()
: BALL::VIEW::TestFramework
- processEvents()
: BALL::VIEW::MainControl
- processMoveModeMouseEvents_()
: BALL::VIEW::Scene
- processRotateModeMouseEvents_()
: BALL::VIEW::Scene
- processShiftLine_()
: BALL::NMRStarFile
- Product()
: BALL::Product< First, Second, DataType >
- project()
: BALL::Pair6_12RDFIntegrator
, BALL::PairExpRDFIntegrator
- projectionTransformationChanged()
: BALL::VIEW::StageSettings
- prolineActivated()
: BALL::VIEW::PeptideDialog
- prolineDeactivated()
: BALL::VIEW::PeptideDialog
- Property()
: BALL::SmartsParser::SPAtom::Property
- PropertyManager()
: BALL::PropertyManager
- Protein()
: BALL::Protein
- ProteinIteratorTraits()
: BALL::ProteinIteratorTraits
- protomode()
: BALL::VIEW::ExportGeometryDialog
- PTE_()
: BALL::PTE_
- PTEDialog()
: BALL::VIEW::PTEDialog
- PubChemDialog()
: BALL::VIEW::PubChemDialog
- push()
: BALL::RingPerceptionProcessor::PathMessage_
, BALL::ResourceEntry::IteratorTraits_
- push_back()
: BALL::PDBRecords
- pushBackNormal()
: BALL::TSurface< T >
- pushBackTriangle()
: BALL::TSurface< T >
- pushBackVertex()
: BALL::TSurface< T >
- pushConcaveEdge()
: BALL::SESComputer
- pushVertex()
: BALL::SESComputer
- put()
: BALL::XDRPersistenceManager
, BALL::PersistenceManager
, BALL::XDRPersistenceManager
, BALL::TextPersistenceManager
, BALL::XDRPersistenceManager
, BALL::TextPersistenceManager
, BALL::XDRPersistenceManager
, BALL::TextPersistenceManager
, BALL::PersistenceManager
, BALL::XDRPersistenceManager
, BALL::TextPersistenceManager
, BALL::XDRPersistenceManager
, BALL::PersistenceManager
, BALL::XDRPersistenceManager
, BALL::TextPersistenceManager
, BALL::PersistenceManager
, BALL::TextPersistenceManager
, BALL::XDRPersistenceManager
, BALL::PersistenceManager
, BALL::XDRPersistenceManager
- PyColorRGBAVector()
: BALL::PyColorRGBAVector
- PyCompositeList()
: BALL::PyCompositeList
- PyDatasetVector()
: BALL::PyDatasetVector
- PyIndexList()
: BALL::PyIndexList
- PyInterpreter()
: BALL::PyInterpreter
- PythonHighlighter()
: BALL::VIEW::PythonHighlighter
- PythonSettings()
: BALL::VIEW::PythonSettings
- PyWidget()
: BALL::VIEW::PyWidget