Alphabet.h File Reference
Go to the source code of this file.
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Classes |
class | CAlphabet |
Enumerations |
enum | EAlphabet {
DNA = 0,
RAWDNA = 1,
RNA = 2,
PROTEIN = 3,
ALPHANUM = 5,
CUBE = 6,
RAWBYTE = 7,
IUPAC_NUCLEIC_ACID = 8,
IUPAC_AMINO_ACID = 9,
NONE = 10,
UNKNOWN = 11
} |
| Alphabet of charfeatures/observations. More...
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Enumeration Type Documentation
Alphabet of charfeatures/observations.
- Enumerator:
-
DNA |
DNA - letters A,C,G,T,*,N,n. |
RAWDNA |
RAWDNA - letters 0,1,2,3. |
RNA |
RNA - letters A,C,G,U,*,N,n. |
PROTEIN |
PROTEIN - letters a-z. |
ALPHANUM |
ALPHANUM - [0-9a-z]. |
CUBE |
CUBE - [1-6]. |
RAWBYTE |
RAW BYTE - [0-255]. |
IUPAC_NUCLEIC_ACID |
IUPAC_NUCLEIC_ACID. |
IUPAC_AMINO_ACID |
IUPAC_AMINO_ACID. |
NONE |
NONE - type has no alphabet. |
UNKNOWN |
unknown alphabet |
Definition at line 20 of file Alphabet.h.