Alphabet.h File Reference

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Classes

class  CAlphabet

Enumerations

enum  EAlphabet {
  DNA = 0, RAWDNA = 1, RNA = 2, PROTEIN = 3,
  ALPHANUM = 5, CUBE = 6, RAWBYTE = 7, IUPAC_NUCLEIC_ACID = 8,
  IUPAC_AMINO_ACID = 9, NONE = 10, UNKNOWN = 11
}
 Alphabet of charfeatures/observations. More...


Enumeration Type Documentation

enum EAlphabet

Alphabet of charfeatures/observations.

Enumerator:
DNA  DNA - letters A,C,G,T,*,N,n.
RAWDNA  RAWDNA - letters 0,1,2,3.
RNA  RNA - letters A,C,G,U,*,N,n.
PROTEIN  PROTEIN - letters a-z.
ALPHANUM  ALPHANUM - [0-9a-z].
CUBE  CUBE - [1-6].
RAWBYTE  RAW BYTE - [0-255].
IUPAC_NUCLEIC_ACID  IUPAC_NUCLEIC_ACID.
IUPAC_AMINO_ACID  IUPAC_AMINO_ACID.
NONE  NONE - type has no alphabet.
UNKNOWN  unknown alphabet

Definition at line 20 of file Alphabet.h.


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