, including all inherited members.
add_example_to_single_tree(INT idx, DREAL weight, INT tree_num) | CWeightedDegreePositionStringKernel | [protected] |
add_example_to_tree(INT idx, DREAL weight) | CWeightedDegreePositionStringKernel | [protected, virtual] |
add_to_normal(INT idx, DREAL weight) | CWeightedDegreePositionStringKernel | [virtual] |
alphabet | CWeightedDegreePositionStringKernel | [protected] |
block_computation | CWeightedDegreePositionStringKernel | [protected] |
block_weights | CWeightedDegreePositionStringKernel | [protected] |
block_weights_external | CWeightedDegreePositionStringKernel | [protected] |
cache_size | CKernel | [protected] |
CKernel(INT size) | CKernel | |
CKernel(CFeatures *l, CFeatures *r, INT size) | CKernel | |
cleanup() | CWeightedDegreePositionStringKernel | [virtual] |
cleanup_POIM2() | CWeightedDegreePositionStringKernel | |
clear_normal() | CWeightedDegreePositionStringKernel | [virtual] |
combined_kernel_weight | CKernel | [protected] |
compute(INT idx_a, INT idx_b) | CWeightedDegreePositionStringKernel | [protected, virtual] |
compute_abs_weights(INT &len) | CWeightedDegreePositionStringKernel | |
compute_batch(INT num_vec, INT *vec_idx, DREAL *target, INT num_suppvec, INT *IDX, DREAL *alphas, DREAL factor=1.0) | CWeightedDegreePositionStringKernel | [virtual] |
compute_batch_helper(void *p) | CWeightedDegreePositionStringKernel | [static] |
compute_by_subkernel(INT idx, DREAL *subkernel_contrib) | CWeightedDegreePositionStringKernel | [virtual] |
compute_by_tree(INT idx) | CWeightedDegreePositionStringKernel | [virtual] |
compute_by_tree(INT idx, DREAL *LevelContrib) | CWeightedDegreePositionStringKernel | [virtual] |
compute_consensus(INT &num_feat, INT num_suppvec, INT *IDX, DREAL *alphas) | CWeightedDegreePositionStringKernel | |
compute_optimized(INT idx) | CWeightedDegreePositionStringKernel | [virtual] |
compute_POIM(INT max_degree, INT &num_feat, INT &num_sym, DREAL *poim_result, INT num_suppvec, INT *IDX, DREAL *alphas, DREAL *distrib) | CWeightedDegreePositionStringKernel | |
compute_POIM2(INT max_degree, CSVM *svm) | CWeightedDegreePositionStringKernel | |
compute_scoring(INT max_degree, INT &num_feat, INT &num_sym, DREAL *target, INT num_suppvec, INT *IDX, DREAL *weights) | CWeightedDegreePositionStringKernel | |
compute_with_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
compute_without_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
compute_without_mismatch_matrix(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
compute_without_mismatch_position_weights(CHAR *avec, DREAL *posweights_lhs, INT alen, CHAR *bvec, DREAL *posweights_rhs, INT blen) | CWeightedDegreePositionStringKernel | [protected] |
create_empty_tries() | CWeightedDegreePositionStringKernel | [protected] |
CSGObject() | CSGObject | |
CSGObject(const CSGObject &orig) | CSGObject | |
CStringKernel(INT cachesize) | CStringKernel< ST > | |
CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< ST > | |
CWeightedDegreePositionStringKernel(INT size, INT degree, INT max_mismatch=0, bool use_norm=true, INT mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
CWeightedDegreePositionStringKernel(INT size, DREAL *weights, INT degree, INT max_mismatch, INT *shift, INT shift_len, bool use_norm=true, INT mkl_stepsize=1) | CWeightedDegreePositionStringKernel | |
CWeightedDegreePositionStringKernel(CStringFeatures< CHAR > *l, CStringFeatures< CHAR > *r, INT degree) | CWeightedDegreePositionStringKernel | |
degree | CWeightedDegreePositionStringKernel | [protected] |
delete_optimization() | CWeightedDegreePositionStringKernel | [virtual] |
delete_position_weights() | CWeightedDegreePositionStringKernel | |
delete_position_weights_lhs() | CWeightedDegreePositionStringKernel | |
delete_position_weights_rhs() | CWeightedDegreePositionStringKernel | |
do_precompute_matrix() | CKernel | [protected] |
extract_w(INT max_degree, INT &num_feat, INT &num_sym, DREAL *w_result, INT num_suppvec, INT *IDX, DREAL *alphas) | CWeightedDegreePositionStringKernel | |
get_cache_size() | CKernel | |
get_combined_kernel_weight() | CKernel | |
get_degree() | CWeightedDegreePositionStringKernel | |
get_degree_weights(INT &d, INT &len) | CWeightedDegreePositionStringKernel | |
get_feature_class() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_is_initialized() | CKernel | |
get_kernel_matrix(DREAL **dst, INT *m, INT *n) | CKernel | |
get_kernel_matrix_real(int &m, int &n, DREAL *target) | CKernel | [virtual] |
get_kernel_matrix_shortreal(int &m, int &n, SHORTREAL *target) | CKernel | [virtual] |
get_kernel_type() | CWeightedDegreePositionStringKernel | [virtual] |
get_lhs() | CKernel | |
get_max_mismatch() | CWeightedDegreePositionStringKernel | |
get_name() | CWeightedDegreePositionStringKernel | [virtual] |
get_normalization_const() | CWeightedDegreePositionStringKernel | |
get_num_subkernels() | CWeightedDegreePositionStringKernel | [virtual] |
get_num_vec_lhs() | CKernel | |
get_num_vec_rhs() | CKernel | |
get_optimization_type() | CKernel | |
get_POIM2(DREAL **poim, INT *result_len) | CWeightedDegreePositionStringKernel | |
get_position_weights(INT &len) | CWeightedDegreePositionStringKernel | |
get_precompute_matrix() | CKernel | |
get_precompute_subkernel_matrix() | CKernel | |
get_rhs() | CKernel | |
get_subkernel_weights(INT &num_weights) | CWeightedDegreePositionStringKernel | [virtual] |
get_use_normalization() | CWeightedDegreePositionStringKernel | |
get_weights(INT &num_weights) | CWeightedDegreePositionStringKernel | |
has_features() | CKernel | |
has_property(EKernelProperty p) | CKernel | |
init(CFeatures *l, CFeatures *r) | CWeightedDegreePositionStringKernel | [virtual] |
init_block_weights() | CWeightedDegreePositionStringKernel | |
init_block_weights_const() | CWeightedDegreePositionStringKernel | |
init_block_weights_cubicpoly() | CWeightedDegreePositionStringKernel | |
init_block_weights_exp() | CWeightedDegreePositionStringKernel | |
init_block_weights_external() | CWeightedDegreePositionStringKernel | |
init_block_weights_from_wd() | CWeightedDegreePositionStringKernel | |
init_block_weights_from_wd_external() | CWeightedDegreePositionStringKernel | |
init_block_weights_linear() | CWeightedDegreePositionStringKernel | |
init_block_weights_log() | CWeightedDegreePositionStringKernel | |
init_block_weights_sqpoly() | CWeightedDegreePositionStringKernel | |
init_optimization(INT p_count, INT *IDX, DREAL *alphas) | CWeightedDegreePositionStringKernel | [virtual] |
init_optimization(INT count, INT *IDX, DREAL *alphas, INT tree_num, INT upto_tree=-1) | CWeightedDegreePositionStringKernel | [virtual] |
init_optimization_svm(CSVM *svm) | CKernel | |
init_sqrt_diag(DREAL *v, INT num) | CKernel | [protected] |
initialized | CWeightedDegreePositionStringKernel | [protected] |
io | CSGObject | [static] |
is_tree_initialized() | CWeightedDegreePositionStringKernel | |
kernel(INT idx_a, INT idx_b) | CKernel | |
kernel_matrix | CKernel | [protected] |
length | CWeightedDegreePositionStringKernel | [protected] |
lhs | CKernel | [protected] |
list_kernel() | CKernel | |
load(CHAR *fname) | CKernel | |
load_init(FILE *src) | CWeightedDegreePositionStringKernel | [virtual] |
m_poim | CWeightedDegreePositionStringKernel | [protected] |
m_poim_distrib | CWeightedDegreePositionStringKernel | [protected] |
m_poim_num_feat | CWeightedDegreePositionStringKernel | [protected] |
m_poim_num_sym | CWeightedDegreePositionStringKernel | [protected] |
m_poim_result_len | CWeightedDegreePositionStringKernel | [protected] |
max_mismatch | CWeightedDegreePositionStringKernel | [protected] |
max_shift | CWeightedDegreePositionStringKernel | [protected] |
mkl_stepsize | CWeightedDegreePositionStringKernel | [protected] |
normalization_const | CWeightedDegreePositionStringKernel | [protected] |
num_block_weights_external | CWeightedDegreePositionStringKernel | [protected] |
opt_type | CKernel | [protected] |
optimization_initialized | CKernel | [protected] |
parallel | CSGObject | [static] |
poim_tries | CWeightedDegreePositionStringKernel | [protected] |
position_mask | CWeightedDegreePositionStringKernel | [protected] |
position_weights | CWeightedDegreePositionStringKernel | [protected] |
position_weights_lhs | CWeightedDegreePositionStringKernel | [protected] |
position_weights_rhs | CWeightedDegreePositionStringKernel | [protected] |
precompute_matrix | CKernel | [protected] |
precompute_subkernel_matrix | CKernel | [protected] |
precomputed_matrix | CKernel | [protected] |
prepare_POIM2(DREAL *distrib, INT num_sym, INT num_feat) | CWeightedDegreePositionStringKernel | |
properties | CKernel | [protected] |
remove_lhs() | CWeightedDegreePositionStringKernel | [protected, virtual] |
remove_lhs_and_rhs() | CKernel | [virtual] |
remove_rhs() | CKernel | [virtual] |
rhs | CKernel | [protected] |
save(CHAR *fname) | CKernel | |
save_init(FILE *dest) | CWeightedDegreePositionStringKernel | [virtual] |
seq_length | CWeightedDegreePositionStringKernel | [protected] |
set_cache_size(INT size) | CKernel | |
set_combined_kernel_weight(double nw) | CKernel | |
set_is_initialized(bool p_init) | CKernel | [protected] |
set_optimization_type(EOptimizationType t) | CKernel | [virtual] |
set_position_weights(DREAL *position_weights, INT len=0) | CWeightedDegreePositionStringKernel | [virtual] |
set_position_weights_lhs(DREAL *pws, INT len, INT num) | CWeightedDegreePositionStringKernel | |
set_position_weights_rhs(DREAL *pws, INT len, INT num) | CWeightedDegreePositionStringKernel | |
set_precompute_matrix(bool flag, bool subkernel_flag) | CKernel | [virtual] |
set_property(EKernelProperty p) | CKernel | [protected] |
set_shifts(INT *shifts, INT len) | CWeightedDegreePositionStringKernel | |
set_subkernel_weights(DREAL *weights2, INT num_weights2) | CWeightedDegreePositionStringKernel | [virtual] |
set_wd_weights() | CWeightedDegreePositionStringKernel | [virtual] |
set_weights(DREAL *weights, INT d, INT len=0) | CWeightedDegreePositionStringKernel | [virtual] |
shift | CWeightedDegreePositionStringKernel | [protected] |
shift_len | CWeightedDegreePositionStringKernel | [protected] |
tree_initialized | CWeightedDegreePositionStringKernel | [protected] |
tries | CWeightedDegreePositionStringKernel | [protected] |
type | CWeightedDegreePositionStringKernel | [protected] |
unset_property(EKernelProperty p) | CKernel | [protected] |
use_normalization | CWeightedDegreePositionStringKernel | [protected] |
use_poim_tries | CWeightedDegreePositionStringKernel | [protected] |
version | CSGObject | [static] |
weights | CWeightedDegreePositionStringKernel | [protected] |
weights_buffer | CWeightedDegreePositionStringKernel | [protected] |
which_degree | CWeightedDegreePositionStringKernel | [protected] |
~CKernel() | CKernel | [virtual] |
~CSGObject() | CSGObject | [virtual] |
~CWeightedDegreePositionStringKernel() | CWeightedDegreePositionStringKernel | [virtual] |