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Defines | |
#define | NAA 20 |
#define | NLET 26 |
#define | OPENING 12 |
#define | EXTENSION 2 |
#define | BINDEX(i, j) (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2)) |
#define | SCALING 0.1 |
#define | LOGP(x, y) LogSum(x,y) |
#define | LOG0 -10000 |
#define | INTSCALE 1000.0 |
Variables | |
static const char * | aaList = "ARNDCQEGHILKMFPSTWYV" |
#define BINDEX | ( | i, | |||
j | ) | (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2)) |
Definition at line 68 of file LocalAlignmentStringKernel.cpp.
#define EXTENSION 2 |
Definition at line 42 of file LocalAlignmentStringKernel.cpp.
#define INTSCALE 1000.0 |
Definition at line 91 of file LocalAlignmentStringKernel.cpp.
#define LOG0 -10000 |
Definition at line 90 of file LocalAlignmentStringKernel.cpp.
#define LOGP | ( | x, | |||
y | ) | LogSum(x,y) |
Definition at line 82 of file LocalAlignmentStringKernel.cpp.
#define NAA 20 |
Definition at line 33 of file LocalAlignmentStringKernel.cpp.
#define NLET 26 |
Definition at line 34 of file LocalAlignmentStringKernel.cpp.
#define OPENING 12 |
Definition at line 41 of file LocalAlignmentStringKernel.cpp.
#define SCALING 0.1 |
Definition at line 74 of file LocalAlignmentStringKernel.cpp.
const char* aaList = "ARNDCQEGHILKMFPSTWYV" [static] |
Definition at line 35 of file LocalAlignmentStringKernel.cpp.