, including all inherited members.
add_example_to_single_tree(INT idx, DREAL weight, INT tree_num) | CWeightedDegreeStringKernel | [protected] |
add_example_to_single_tree_mismatch(INT idx, DREAL weight, INT tree_num) | CWeightedDegreeStringKernel | [protected] |
add_example_to_tree(INT idx, DREAL weight) | CWeightedDegreeStringKernel | [protected] |
add_example_to_tree_mismatch(INT idx, DREAL weight) | CWeightedDegreeStringKernel | [protected] |
add_example_to_tree_mismatch_recursion(DNATrie *tree, DREAL alpha, INT *vec, INT len_rem, INT depth_rec, INT mismatch_rec) | CWeightedDegreeStringKernel | [protected] |
add_to_normal(INT idx, DREAL weight) | CWeightedDegreeStringKernel | [virtual] |
alphabet | CWeightedDegreeStringKernel | [protected] |
block_computation | CWeightedDegreeStringKernel | [protected] |
block_weights | CWeightedDegreeStringKernel | [protected] |
block_weights_external | CWeightedDegreeStringKernel | [protected] |
cache_size | CKernel | [protected] |
CKernel(INT size) | CKernel | |
CKernel(CFeatures *l, CFeatures *r, INT size) | CKernel | |
cleanup() | CWeightedDegreeStringKernel | [virtual] |
clear_normal() | CWeightedDegreeStringKernel | [virtual] |
combined_kernel_weight | CKernel | [protected] |
compute(INT idx_a, INT idx_b) | CWeightedDegreeStringKernel | [protected, virtual] |
compute_abs_weights(INT &len) | CWeightedDegreeStringKernel | |
compute_batch(INT num_vec, INT *vec_idx, DREAL *target, INT num_suppvec, INT *IDX, DREAL *alphas, DREAL factor=1.0) | CWeightedDegreeStringKernel | [virtual] |
compute_batch_helper(void *p) | CWeightedDegreeStringKernel | [static] |
compute_by_subkernel(INT idx, DREAL *subkernel_contrib) | CWeightedDegreeStringKernel | [virtual] |
compute_by_tree(INT idx, DREAL *LevelContrib) | CWeightedDegreeStringKernel | |
compute_by_tree(INT idx) | CWeightedDegreeStringKernel | [protected] |
compute_optimized(INT idx) | CWeightedDegreeStringKernel | [virtual] |
compute_using_block(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreeStringKernel | [protected] |
compute_with_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreeStringKernel | [protected] |
compute_without_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreeStringKernel | [protected] |
compute_without_mismatch_matrix(CHAR *avec, INT alen, CHAR *bvec, INT blen) | CWeightedDegreeStringKernel | [protected] |
create_empty_tries() | CWeightedDegreeStringKernel | [protected] |
CSGObject() | CSGObject | |
CSGObject(const CSGObject &orig) | CSGObject | |
CStringKernel(INT cachesize) | CStringKernel< ST > | |
CStringKernel(CFeatures *l, CFeatures *r) | CStringKernel< ST > | |
CWeightedDegreeStringKernel(INT degree, EWDKernType type=E_WD) | CWeightedDegreeStringKernel | |
CWeightedDegreeStringKernel(DREAL *weights, INT degree) | CWeightedDegreeStringKernel | |
CWeightedDegreeStringKernel(CStringFeatures< CHAR > *l, CStringFeatures< CHAR > *r, INT degree) | CWeightedDegreeStringKernel | |
degree | CWeightedDegreeStringKernel | [protected] |
delete_optimization() | CWeightedDegreeStringKernel | [virtual] |
delete_position_weights() | CWeightedDegreeStringKernel | |
do_precompute_matrix() | CKernel | [protected] |
get_cache_size() | CKernel | |
get_combined_kernel_weight() | CKernel | |
get_degree() | CWeightedDegreeStringKernel | |
get_degree_weights(INT &d, INT &len) | CWeightedDegreeStringKernel | |
get_feature_class() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_feature_type() | CStringKernel< ST > | [virtual] |
get_is_initialized() | CKernel | |
get_kernel_matrix(DREAL **dst, INT *m, INT *n) | CKernel | |
get_kernel_matrix_real(int &m, int &n, DREAL *target) | CKernel | [virtual] |
get_kernel_matrix_shortreal(int &m, int &n, SHORTREAL *target) | CKernel | [virtual] |
get_kernel_type() | CWeightedDegreeStringKernel | [virtual] |
get_lhs() | CKernel | |
get_max_mismatch() | CWeightedDegreeStringKernel | |
get_mkl_stepsize() | CWeightedDegreeStringKernel | |
get_name() | CWeightedDegreeStringKernel | [virtual] |
get_normalization_const() | CWeightedDegreeStringKernel | |
get_num_subkernels() | CWeightedDegreeStringKernel | [virtual] |
get_num_vec_lhs() | CKernel | |
get_num_vec_rhs() | CKernel | |
get_optimization_type() | CKernel | |
get_position_weights(INT &len) | CWeightedDegreeStringKernel | |
get_precompute_matrix() | CKernel | |
get_precompute_subkernel_matrix() | CKernel | |
get_rhs() | CKernel | |
get_subkernel_weights(INT &num_weights) | CWeightedDegreeStringKernel | [virtual] |
get_use_block_computation() | CWeightedDegreeStringKernel | |
get_use_normalization() | CWeightedDegreeStringKernel | |
get_weights(INT &num_weights) | CWeightedDegreeStringKernel | |
get_which_degree() | CWeightedDegreeStringKernel | |
has_features() | CKernel | |
has_property(EKernelProperty p) | CKernel | |
init(CFeatures *l, CFeatures *r) | CWeightedDegreeStringKernel | [virtual] |
init_block_weights() | CWeightedDegreeStringKernel | |
init_block_weights_const() | CWeightedDegreeStringKernel | |
init_block_weights_cubicpoly() | CWeightedDegreeStringKernel | |
init_block_weights_exp() | CWeightedDegreeStringKernel | |
init_block_weights_external() | CWeightedDegreeStringKernel | |
init_block_weights_from_wd() | CWeightedDegreeStringKernel | |
init_block_weights_from_wd_external() | CWeightedDegreeStringKernel | |
init_block_weights_linear() | CWeightedDegreeStringKernel | |
init_block_weights_log() | CWeightedDegreeStringKernel | |
init_block_weights_sqpoly() | CWeightedDegreeStringKernel | |
init_optimization(INT count, INT *IDX, DREAL *alphas) | CWeightedDegreeStringKernel | [virtual] |
init_optimization(INT count, INT *IDX, DREAL *alphas, INT tree_num) | CWeightedDegreeStringKernel | [virtual] |
init_optimization_svm(CSVM *svm) | CKernel | |
init_sqrt_diag(DREAL *v, INT num) | CKernel | [protected] |
initialized | CWeightedDegreeStringKernel | [protected] |
io | CSGObject | [static] |
is_tree_initialized() | CWeightedDegreeStringKernel | |
kernel(INT idx_a, INT idx_b) | CKernel | |
kernel_matrix | CKernel | [protected] |
length | CWeightedDegreeStringKernel | [protected] |
lhs | CKernel | [protected] |
list_kernel() | CKernel | |
load(CHAR *fname) | CKernel | |
load_init(FILE *src) | CWeightedDegreeStringKernel | [virtual] |
max_mismatch | CWeightedDegreeStringKernel | [protected] |
mkl_stepsize | CWeightedDegreeStringKernel | [protected] |
normalization_const | CWeightedDegreeStringKernel | [protected] |
num_block_weights_external | CWeightedDegreeStringKernel | [protected] |
opt_type | CKernel | [protected] |
optimization_initialized | CKernel | [protected] |
parallel | CSGObject | [static] |
position_weights | CWeightedDegreeStringKernel | [protected] |
precompute_matrix | CKernel | [protected] |
precompute_subkernel_matrix | CKernel | [protected] |
precomputed_matrix | CKernel | [protected] |
properties | CKernel | [protected] |
remove_lhs() | CWeightedDegreeStringKernel | [protected, virtual] |
remove_lhs_and_rhs() | CKernel | [virtual] |
remove_rhs() | CKernel | [virtual] |
rhs | CKernel | [protected] |
save(CHAR *fname) | CKernel | |
save_init(FILE *dest) | CWeightedDegreeStringKernel | [virtual] |
seq_length | CWeightedDegreeStringKernel | [protected] |
set_cache_size(INT size) | CKernel | |
set_combined_kernel_weight(double nw) | CKernel | |
set_degree(INT deg) | CWeightedDegreeStringKernel | |
set_is_initialized(bool p_init) | CKernel | [protected] |
set_max_mismatch(INT max) | CWeightedDegreeStringKernel | |
set_mkl_stepsize(INT step) | CWeightedDegreeStringKernel | |
set_optimization_type(EOptimizationType t) | CKernel | [virtual] |
set_position_weights(DREAL *position_weights, INT len=0) | CWeightedDegreeStringKernel | |
set_precompute_matrix(bool flag, bool subkernel_flag) | CKernel | [virtual] |
set_property(EKernelProperty p) | CKernel | [protected] |
set_subkernel_weights(DREAL *weights2, INT num_weights2) | CWeightedDegreeStringKernel | [virtual] |
set_use_block_computation(bool block) | CWeightedDegreeStringKernel | |
set_use_normalization(bool opt) | CWeightedDegreeStringKernel | |
set_wd_weights(DREAL *p_weights, INT d) | CWeightedDegreeStringKernel | |
set_wd_weights_by_type(EWDKernType type) | CWeightedDegreeStringKernel | |
set_weights(DREAL *weights, INT d, INT len) | CWeightedDegreeStringKernel | |
set_which_degree(INT which) | CWeightedDegreeStringKernel | |
tree_initialized | CWeightedDegreeStringKernel | [protected] |
tries | CWeightedDegreeStringKernel | [protected] |
type | CWeightedDegreeStringKernel | [protected] |
unset_property(EKernelProperty p) | CKernel | [protected] |
use_normalization | CWeightedDegreeStringKernel | [protected] |
version | CSGObject | [static] |
weights | CWeightedDegreeStringKernel | [protected] |
weights_buffer | CWeightedDegreeStringKernel | [protected] |
which_degree | CWeightedDegreeStringKernel | [protected] |
~CKernel() | CKernel | [virtual] |
~CSGObject() | CSGObject | [virtual] |
~CWeightedDegreeStringKernel() | CWeightedDegreeStringKernel | [virtual] |