CWeightedDegreePositionStringKernel Member List

This is the complete list of members for CWeightedDegreePositionStringKernel, including all inherited members.

add_example_to_single_tree(INT idx, DREAL weight, INT tree_num)CWeightedDegreePositionStringKernel [protected]
add_example_to_tree(INT idx, DREAL weight)CWeightedDegreePositionStringKernel [protected, virtual]
add_to_normal(INT idx, DREAL weight)CWeightedDegreePositionStringKernel [virtual]
alphabetCWeightedDegreePositionStringKernel [protected]
block_computationCWeightedDegreePositionStringKernel [protected]
block_weightsCWeightedDegreePositionStringKernel [protected]
block_weights_externalCWeightedDegreePositionStringKernel [protected]
cache_sizeCKernel [protected]
CKernel(INT size)CKernel
CKernel(CFeatures *l, CFeatures *r, INT size)CKernel
cleanup()CWeightedDegreePositionStringKernel [virtual]
cleanup_POIM2()CWeightedDegreePositionStringKernel
clear_normal()CWeightedDegreePositionStringKernel [virtual]
combined_kernel_weightCKernel [protected]
compute(INT idx_a, INT idx_b)CWeightedDegreePositionStringKernel [protected, virtual]
compute_abs_weights(INT &len)CWeightedDegreePositionStringKernel
compute_batch(INT num_vec, INT *vec_idx, DREAL *target, INT num_suppvec, INT *IDX, DREAL *alphas, DREAL factor=1.0)CWeightedDegreePositionStringKernel [virtual]
compute_batch_helper(void *p)CWeightedDegreePositionStringKernel [static]
compute_by_subkernel(INT idx, DREAL *subkernel_contrib)CWeightedDegreePositionStringKernel [virtual]
compute_by_tree(INT idx)CWeightedDegreePositionStringKernel [virtual]
compute_by_tree(INT idx, DREAL *LevelContrib)CWeightedDegreePositionStringKernel [virtual]
compute_consensus(INT &num_feat, INT num_suppvec, INT *IDX, DREAL *alphas)CWeightedDegreePositionStringKernel
compute_optimized(INT idx)CWeightedDegreePositionStringKernel [virtual]
compute_POIM(INT max_degree, INT &num_feat, INT &num_sym, DREAL *poim_result, INT num_suppvec, INT *IDX, DREAL *alphas, DREAL *distrib)CWeightedDegreePositionStringKernel
compute_POIM2(INT max_degree, CSVM *svm)CWeightedDegreePositionStringKernel
compute_scoring(INT max_degree, INT &num_feat, INT &num_sym, DREAL *target, INT num_suppvec, INT *IDX, DREAL *weights)CWeightedDegreePositionStringKernel
compute_with_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen)CWeightedDegreePositionStringKernel [protected]
compute_without_mismatch(CHAR *avec, INT alen, CHAR *bvec, INT blen)CWeightedDegreePositionStringKernel [protected]
compute_without_mismatch_matrix(CHAR *avec, INT alen, CHAR *bvec, INT blen)CWeightedDegreePositionStringKernel [protected]
compute_without_mismatch_position_weights(CHAR *avec, DREAL *posweights_lhs, INT alen, CHAR *bvec, DREAL *posweights_rhs, INT blen)CWeightedDegreePositionStringKernel [protected]
create_empty_tries()CWeightedDegreePositionStringKernel [protected]
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
CStringKernel(INT cachesize)CStringKernel< ST >
CStringKernel(CFeatures *l, CFeatures *r)CStringKernel< ST >
CWeightedDegreePositionStringKernel(INT size, INT degree, INT max_mismatch=0, bool use_norm=true, INT mkl_stepsize=1)CWeightedDegreePositionStringKernel
CWeightedDegreePositionStringKernel(INT size, DREAL *weights, INT degree, INT max_mismatch, INT *shift, INT shift_len, bool use_norm=true, INT mkl_stepsize=1)CWeightedDegreePositionStringKernel
CWeightedDegreePositionStringKernel(CStringFeatures< CHAR > *l, CStringFeatures< CHAR > *r, INT degree)CWeightedDegreePositionStringKernel
degreeCWeightedDegreePositionStringKernel [protected]
delete_optimization()CWeightedDegreePositionStringKernel [virtual]
delete_position_weights()CWeightedDegreePositionStringKernel
delete_position_weights_lhs()CWeightedDegreePositionStringKernel
delete_position_weights_rhs()CWeightedDegreePositionStringKernel
do_precompute_matrix()CKernel [protected]
extract_w(INT max_degree, INT &num_feat, INT &num_sym, DREAL *w_result, INT num_suppvec, INT *IDX, DREAL *alphas)CWeightedDegreePositionStringKernel
get_cache_size()CKernel
get_combined_kernel_weight()CKernel
get_degree()CWeightedDegreePositionStringKernel
get_degree_weights(INT &d, INT &len)CWeightedDegreePositionStringKernel
get_feature_class()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_feature_type()CStringKernel< ST > [virtual]
get_is_initialized()CKernel
get_kernel_matrix(DREAL **dst, INT *m, INT *n)CKernel
get_kernel_matrix_real(int &m, int &n, DREAL *target)CKernel [virtual]
get_kernel_matrix_shortreal(int &m, int &n, SHORTREAL *target)CKernel [virtual]
get_kernel_type()CWeightedDegreePositionStringKernel [virtual]
get_lhs()CKernel
get_max_mismatch()CWeightedDegreePositionStringKernel
get_name()CWeightedDegreePositionStringKernel [virtual]
get_normalization_const()CWeightedDegreePositionStringKernel
get_num_subkernels()CWeightedDegreePositionStringKernel [virtual]
get_num_vec_lhs()CKernel
get_num_vec_rhs()CKernel
get_optimization_type()CKernel
get_POIM2(DREAL **poim, INT *result_len)CWeightedDegreePositionStringKernel
get_position_weights(INT &len)CWeightedDegreePositionStringKernel
get_precompute_matrix()CKernel
get_precompute_subkernel_matrix()CKernel
get_rhs()CKernel
get_subkernel_weights(INT &num_weights)CWeightedDegreePositionStringKernel [virtual]
get_use_normalization()CWeightedDegreePositionStringKernel
get_weights(INT &num_weights)CWeightedDegreePositionStringKernel
has_features()CKernel
has_property(EKernelProperty p)CKernel
init(CFeatures *l, CFeatures *r)CWeightedDegreePositionStringKernel [virtual]
init_block_weights()CWeightedDegreePositionStringKernel
init_block_weights_const()CWeightedDegreePositionStringKernel
init_block_weights_cubicpoly()CWeightedDegreePositionStringKernel
init_block_weights_exp()CWeightedDegreePositionStringKernel
init_block_weights_external()CWeightedDegreePositionStringKernel
init_block_weights_from_wd()CWeightedDegreePositionStringKernel
init_block_weights_from_wd_external()CWeightedDegreePositionStringKernel
init_block_weights_linear()CWeightedDegreePositionStringKernel
init_block_weights_log()CWeightedDegreePositionStringKernel
init_block_weights_sqpoly()CWeightedDegreePositionStringKernel
init_optimization(INT p_count, INT *IDX, DREAL *alphas)CWeightedDegreePositionStringKernel [virtual]
init_optimization(INT count, INT *IDX, DREAL *alphas, INT tree_num, INT upto_tree=-1)CWeightedDegreePositionStringKernel [virtual]
init_optimization_svm(CSVM *svm)CKernel
init_sqrt_diag(DREAL *v, INT num)CKernel [protected]
initializedCWeightedDegreePositionStringKernel [protected]
ioCSGObject [static]
is_tree_initialized()CWeightedDegreePositionStringKernel
kernel(INT idx_a, INT idx_b)CKernel
kernel_matrixCKernel [protected]
lengthCWeightedDegreePositionStringKernel [protected]
lhsCKernel [protected]
list_kernel()CKernel
load(CHAR *fname)CKernel
load_init(FILE *src)CWeightedDegreePositionStringKernel [virtual]
m_poimCWeightedDegreePositionStringKernel [protected]
m_poim_distribCWeightedDegreePositionStringKernel [protected]
m_poim_num_featCWeightedDegreePositionStringKernel [protected]
m_poim_num_symCWeightedDegreePositionStringKernel [protected]
m_poim_result_lenCWeightedDegreePositionStringKernel [protected]
max_mismatchCWeightedDegreePositionStringKernel [protected]
max_shiftCWeightedDegreePositionStringKernel [protected]
mkl_stepsizeCWeightedDegreePositionStringKernel [protected]
normalization_constCWeightedDegreePositionStringKernel [protected]
num_block_weights_externalCWeightedDegreePositionStringKernel [protected]
opt_typeCKernel [protected]
optimization_initializedCKernel [protected]
parallelCSGObject [static]
poim_triesCWeightedDegreePositionStringKernel [protected]
position_maskCWeightedDegreePositionStringKernel [protected]
position_weightsCWeightedDegreePositionStringKernel [protected]
position_weights_lhsCWeightedDegreePositionStringKernel [protected]
position_weights_rhsCWeightedDegreePositionStringKernel [protected]
precompute_matrixCKernel [protected]
precompute_subkernel_matrixCKernel [protected]
precomputed_matrixCKernel [protected]
prepare_POIM2(DREAL *distrib, INT num_sym, INT num_feat)CWeightedDegreePositionStringKernel
propertiesCKernel [protected]
remove_lhs()CWeightedDegreePositionStringKernel [protected, virtual]
remove_lhs_and_rhs()CKernel [virtual]
remove_rhs()CKernel [virtual]
rhsCKernel [protected]
save(CHAR *fname)CKernel
save_init(FILE *dest)CWeightedDegreePositionStringKernel [virtual]
seq_lengthCWeightedDegreePositionStringKernel [protected]
set_cache_size(INT size)CKernel
set_combined_kernel_weight(double nw)CKernel
set_is_initialized(bool p_init)CKernel [protected]
set_optimization_type(EOptimizationType t)CKernel [virtual]
set_position_weights(DREAL *position_weights, INT len=0)CWeightedDegreePositionStringKernel [virtual]
set_position_weights_lhs(DREAL *pws, INT len, INT num)CWeightedDegreePositionStringKernel
set_position_weights_rhs(DREAL *pws, INT len, INT num)CWeightedDegreePositionStringKernel
set_precompute_matrix(bool flag, bool subkernel_flag)CKernel [virtual]
set_property(EKernelProperty p)CKernel [protected]
set_shifts(INT *shifts, INT len)CWeightedDegreePositionStringKernel
set_subkernel_weights(DREAL *weights2, INT num_weights2)CWeightedDegreePositionStringKernel [virtual]
set_wd_weights()CWeightedDegreePositionStringKernel [virtual]
set_weights(DREAL *weights, INT d, INT len=0)CWeightedDegreePositionStringKernel [virtual]
shiftCWeightedDegreePositionStringKernel [protected]
shift_lenCWeightedDegreePositionStringKernel [protected]
tree_initializedCWeightedDegreePositionStringKernel [protected]
triesCWeightedDegreePositionStringKernel [protected]
typeCWeightedDegreePositionStringKernel [protected]
unset_property(EKernelProperty p)CKernel [protected]
use_normalizationCWeightedDegreePositionStringKernel [protected]
use_poim_triesCWeightedDegreePositionStringKernel [protected]
versionCSGObject [static]
weightsCWeightedDegreePositionStringKernel [protected]
weights_bufferCWeightedDegreePositionStringKernel [protected]
which_degreeCWeightedDegreePositionStringKernel [protected]
~CKernel()CKernel [virtual]
~CSGObject()CSGObject [virtual]
~CWeightedDegreePositionStringKernel()CWeightedDegreePositionStringKernel [virtual]


SHOGUN Machine Learning Toolbox - Documentation