, including all inherited members.
add_preproc(CPreProc *p) | CFeatures | [virtual] |
alphabet | CStringFeatures< ST > | [protected] |
apply_preproc(bool force_preprocessing=false) | CStringFeatures< ST > | [virtual] |
CFeatures(INT size) | CFeatures | |
CFeatures(const CFeatures &orig) | CFeatures | |
CFeatures(CHAR *fname) | CFeatures | |
check_feature_compatibility(CFeatures *f) | CFeatures | |
clean_preprocs() | CFeatures | |
cleanup() | CStringFeatures< ST > | |
CSGObject() | CSGObject | |
CSGObject(const CSGObject &orig) | CSGObject | |
CStringFeatures(E_ALPHABET alpha) | CStringFeatures< ST > | |
CStringFeatures(CAlphabet *alpha) | CStringFeatures< ST > | |
CStringFeatures(const CStringFeatures &orig) | CStringFeatures< ST > | |
CStringFeatures(char *fname, E_ALPHABET alpha=DNA) | CStringFeatures< ST > | |
del_preproc(INT num) | CFeatures | [virtual] |
duplicate() const | CStringFeatures< ST > | [virtual] |
features | CStringFeatures< ST > | [protected] |
get_alphabet() | CStringFeatures< ST > | |
get_cache_size() | CFeatures | |
get_feature(INT vec_num, INT feat_num) | CStringFeatures< ST > | [virtual] |
get_feature_class() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_type() | CStringFeatures< ST > | [virtual] |
get_feature_vector(INT num, INT &len) | CStringFeatures< ST > | [virtual] |
get_features(INT &num_str, INT &max_str_len) | CStringFeatures< ST > | [virtual] |
get_masked_symbols(ST symbol, BYTE mask) | CStringFeatures< ST > | |
get_max_num_symbols() | CStringFeatures< ST > | |
get_max_vector_length() | CStringFeatures< ST > | [virtual] |
get_num_preproc() | CFeatures | |
get_num_preprocessed() | CFeatures | |
get_num_symbols() | CStringFeatures< ST > | |
get_num_vectors() | CStringFeatures< ST > | [virtual] |
get_order() | CStringFeatures< ST > | |
get_original_num_symbols() | CStringFeatures< ST > | |
get_preproc(INT num) | CFeatures | |
get_size() | CStringFeatures< ST > | [virtual] |
get_string(ST **dst, INT *len) | CStringFeatures< ST > | |
get_vector_length(INT vec_num) | CStringFeatures< ST > | [virtual] |
have_same_length(INT len) | CStringFeatures< ST > | |
io | CSGObject | [static] |
is_preprocessed(INT num) | CFeatures | |
length_of_single_string | CStringFeatures< ST > | [protected] |
list_feature_obj() | CFeatures | |
load(CHAR *fname) | CStringFeatures< ST > | [virtual] |
load_dna_file(CHAR *fname, bool remap_to_bin=true) | CStringFeatures< ST > | |
load_from_directory(CHAR *dirname) | CStringFeatures< ST > | |
max_string_length | CStringFeatures< ST > | [protected] |
num_symbols | CStringFeatures< ST > | [protected] |
num_vectors | CStringFeatures< ST > | [protected] |
obtain_by_position_list(INT window_size, CDynamicArray< INT > *positions, INT skip=0) | CStringFeatures< ST > | |
obtain_by_sliding_window(INT window_size, INT step_size, INT skip=0) | CStringFeatures< ST > | |
obtain_from_char(CStringFeatures< CHAR > *sf, INT start, INT p_order, INT gap, bool rev) | CStringFeatures< ST > | |
obtain_from_char_features(CStringFeatures< CT > *sf, INT start, INT p_order, INT gap, bool rev) | CStringFeatures< ST > | |
order | CStringFeatures< ST > | [protected] |
original_num_symbols | CStringFeatures< ST > | [protected] |
parallel | CSGObject | [static] |
reshape(INT num_features, INT num_vectors) | CFeatures | [virtual] |
save(CHAR *dest) | CStringFeatures< ST > | [virtual] |
select_feature_vector(INT num) | CStringFeatures< ST > | |
selected_vector | CStringFeatures< ST > | [protected] |
set_feature_vector(INT num, ST *string, INT len) | CStringFeatures< ST > | [virtual] |
set_features(T_STRING< ST > *p_features, INT p_num_vectors, INT p_max_string_length) | CStringFeatures< ST > | |
set_preprocessed(INT num) | CFeatures | |
shift_offset(ST offset, INT amount) | CStringFeatures< ST > | |
shift_symbol(ST symbol, INT amount) | CStringFeatures< ST > | |
single_string | CStringFeatures< ST > | [protected] |
symbol_mask_table | CStringFeatures< ST > | [protected] |
translate_from_single_order(ST *obs, INT sequence_length, INT start, INT p_order, INT max_val) | CStringFeatures< ST > | [protected] |
translate_from_single_order(ST *obs, INT sequence_length, INT start, INT p_order, INT max_val, INT gap) | CStringFeatures< ST > | [protected] |
translate_from_single_order_reversed(ST *obs, INT sequence_length, INT start, INT p_order, INT max_val) | CStringFeatures< ST > | [protected] |
translate_from_single_order_reversed(ST *obs, INT sequence_length, INT start, INT p_order, INT max_val, INT gap) | CStringFeatures< ST > | [protected] |
version | CSGObject | [static] |
~CFeatures() | CFeatures | [virtual] |
~CSGObject() | CSGObject | [virtual] |
~CStringFeatures() | CStringFeatures< ST > | [virtual] |