LocalAlignmentStringKernel.cpp File Reference

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Defines

#define NAA   20
#define NLET   26
#define OPENING   12
#define EXTENSION   2
#define BINDEX(i, j)   (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2))
#define SCALING   0.1
#define LOGP(x, y)   LogSum(x,y)
#define LOG0   -10000
#define INTSCALE   1000.0

Variables

static const char * aaList = "ARNDCQEGHILKMFPSTWYV"


Define Documentation

#define BINDEX ( i,
 )     (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2))

Definition at line 68 of file LocalAlignmentStringKernel.cpp.

#define EXTENSION   2

Definition at line 42 of file LocalAlignmentStringKernel.cpp.

#define INTSCALE   1000.0

Definition at line 91 of file LocalAlignmentStringKernel.cpp.

#define LOG0   -10000

Definition at line 90 of file LocalAlignmentStringKernel.cpp.

#define LOGP ( x,
 )     LogSum(x,y)

Definition at line 82 of file LocalAlignmentStringKernel.cpp.

#define NAA   20

Definition at line 33 of file LocalAlignmentStringKernel.cpp.

#define NLET   26

Definition at line 34 of file LocalAlignmentStringKernel.cpp.

#define OPENING   12

Definition at line 41 of file LocalAlignmentStringKernel.cpp.

#define SCALING   0.1

Definition at line 74 of file LocalAlignmentStringKernel.cpp.


Variable Documentation

const char* aaList = "ARNDCQEGHILKMFPSTWYV" [static]

Definition at line 35 of file LocalAlignmentStringKernel.cpp.


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