public class TheoreticalSensitivity extends Object
Modifier and Type | Class and Description |
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static class |
TheoreticalSensitivity.RouletteWheel |
Constructor and Description |
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TheoreticalSensitivity() |
Modifier and Type | Method and Description |
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static List<ArrayList<Double>> |
hetAltDepthDistribution(int N) |
static double |
hetSNPSensitivity(double[] depthDistribution,
double[] qualityDistribution,
int sampleSize,
double logOddsThreshold) |
static double[] |
normalizeHistogram(Histogram<Integer> histogram) |
static List<ArrayList<Double>> |
proportionsAboveThresholds(List<ArrayList<Integer>> lists,
List<Double> thresholds) |
public static double hetSNPSensitivity(double[] depthDistribution, double[] qualityDistribution, int sampleSize, double logOddsThreshold)
public static List<ArrayList<Double>> proportionsAboveThresholds(List<ArrayList<Integer>> lists, List<Double> thresholds)