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Hierarchy For Package picard.sam.markduplicates.util
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Class Hierarchy
java.lang.
Object
picard.sam.markduplicates.util.
AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator
picard.cmdline.
CommandLineProgram
picard.sam.markduplicates.util.
AbstractOpticalDuplicateFinderCommandLineProgram
picard.sam.markduplicates.util.
AbstractMarkDuplicatesCommandLineProgram
picard.sam.markduplicates.util.
DiskBasedReadEndsForMarkDuplicatesMap
(implements picard.sam.markduplicates.util.
ReadEndsForMarkDuplicatesMap
)
picard.sam.markduplicates.util.
LibraryIdGenerator
picard.sam.markduplicates.util.
MarkQueue
picard.sam.markduplicates.util.
PhysicalLocationForMateCigarSet
picard.sam.util.
PhysicalLocationInt
(implements picard.sam.util.
PhysicalLocation
)
picard.sam.util.
PhysicalLocationShort
picard.sam.markduplicates.util.
PhysicalLocationForMateCigar
picard.sam.markduplicates.util.
ReadEnds
picard.sam.markduplicates.util.
ReadEndsForMarkDuplicates
picard.sam.markduplicates.util.
ReadEndsForMarkDuplicatesWithBarcodes
picard.sam.markduplicates.util.
ReadEndsForMateCigar
picard.sam.markduplicates.util.
ReadEndsForMarkDuplicatesCodec
(implements htsjdk.samtools.util.
SortingCollection.Codec
<T>)
picard.sam.markduplicates.util.
ReadEndsForMarkDuplicatesWithBarcodesCodec
picard.sam.util.
ReadNameParser
picard.sam.markduplicates.util.
OpticalDuplicateFinder
htsjdk.samtools.util.
SamRecordWithOrdinal
picard.sam.markduplicates.util.
SamRecordWithOrdinalAndSetDuplicateReadFlag
Interface Hierarchy
picard.sam.markduplicates.util.
ReadEndsForMarkDuplicatesMap
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