public final class RrbsCpgDetailMetrics extends MultilevelMetrics
Modifier and Type | Field and Description |
---|---|
Integer |
CONVERTED_SITES
Number of times this CpG site was converted (TG for + strand, CA for - strand)
|
Double |
PCT_CONVERTED
TOTAL_BASES / CONVERTED_BASES
|
Integer |
POSITION
Position within the sequence of the CpG site
|
String |
SEQUENCE_NAME
Sequence the CpG is seen in
|
Integer |
TOTAL_SITES
Number of times this CpG site was encountered
|
LIBRARY, READ_GROUP, SAMPLE
Constructor and Description |
---|
RrbsCpgDetailMetrics() |
public String SEQUENCE_NAME
public Integer POSITION
public Integer TOTAL_SITES
public Integer CONVERTED_SITES
public Double PCT_CONVERTED