Package | Description |
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picard.analysis | |
picard.analysis.directed |
Modifier and Type | Field and Description |
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RnaSeqMetricsCollector.StrandSpecificity |
CollectRnaSeqMetrics.STRAND_SPECIFICITY |
Modifier and Type | Method and Description |
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static RnaSeqMetricsCollector.StrandSpecificity |
RnaSeqMetricsCollector.StrandSpecificity.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static RnaSeqMetricsCollector.StrandSpecificity[] |
RnaSeqMetricsCollector.StrandSpecificity.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Constructor and Description |
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RnaSeqMetricsCollector(Set<MetricAccumulationLevel> accumulationLevels,
List<SAMReadGroupRecord> samRgRecords,
Long ribosomalBasesInitialValue,
OverlapDetector<Gene> geneOverlapDetector,
OverlapDetector<Interval> ribosomalSequenceOverlapDetector,
HashSet<Integer> ignoredSequenceIndices,
int minimumLength,
RnaSeqMetricsCollector.StrandSpecificity strandSpecificity,
double rrnaFragmentPercentage,
boolean collectCoverageStatistics) |