Actual source code: petscmat.h

  1: /* $Id: petscmat.h,v 1.228 2001/09/07 20:09:08 bsmith Exp $ */
  2: /*
  3:      Include file for the matrix component of PETSc
  4: */
  5: #ifndef __PETSCMAT_H
 7:  #include petscvec.h

  9: /*S
 10:      Mat - Abstract PETSc matrix object

 12:    Level: beginner

 14:   Concepts: matrix; linear operator

 16: .seealso:  MatCreate(), MatType, MatSetType()
 17: S*/
 18: typedef struct _p_Mat*           Mat;

 20: /*E
 21:     MatType - String with the name of a PETSc matrix or the creation function
 22:        with an optional dynamic library name, for example
 23:        http://www.mcs.anl.gov/petsc/lib.a:mymatcreate()

 25:    Level: beginner

 27: .seealso: MatSetType(), Mat
 28: E*/
 29: #define MATSAME     "same"
 30: #define MATSEQMAIJ  "seqmaij"
 31: #define MATMPIMAIJ  "mpimaij"
 32: #define MATIS       "is"
 33: #define MATMPIROWBS "mpirowbs"
 34: #define MATSEQDENSE "seqdense"
 35: #define MATSEQAIJ   "seqaij"
 36: #define MATMPIAIJ   "mpiaij"
 37: #define MATSHELL    "shell"
 38: #define MATSEQBDIAG "seqbdiag"
 39: #define MATMPIBDIAG "mpibdiag"
 40: #define MATMPIDENSE "mpidense"
 41: #define MATSEQBAIJ  "seqbaij"
 42: #define MATMPIBAIJ  "mpibaij"
 43: #define MATMPIADJ   "mpiadj"
 44: #define MATSEQSBAIJ "seqsbaij"
 45: #define MATMPISBAIJ "mpisbaij"
 46: #define MATDAAD     "daad"
 47: #define MATMFFD     "mffd"
 48: #define MATESI      "esi"
 49: #define MATPETSCESI "petscesi"
 50: typedef char* MatType;

 52: #define MAT_SER_SEQAIJ_BINARY "seqaij_binary"
 53: #define MAT_SER_MPIAIJ_BINARY "mpiaij_binary"
 54: typedef char *MatSerializeType;

 56: /* Logging support */
 57: #define    MAT_FILE_COOKIE 1211216    /* used to indicate matrices in binary files */
 58: extern int MAT_COOKIE;
 59: extern int MATSNESMFCTX_COOKIE;
 60: extern int MAT_FDCOLORING_COOKIE;
 61: extern int MAT_PARTITIONING_COOKIE;
 62: extern int MAT_NULLSPACE_COOKIE;
 63: extern int MAT_Mult, MAT_MultMatrixFree, MAT_MultMultiple, MAT_MultConstrained, MAT_MultAdd, MAT_MultTranspose;
 64: extern int MAT_MultTransposeConstrained, MAT_MultTransposeAdd, MAT_Solve, MAT_SolveMultiple, MAT_SolveAdd, MAT_SolveTranspose;
 65: extern int MAT_SolveTransposeAdd, MAT_Relax, MAT_ForwardSolve, MAT_BackwardSolve, MAT_LUFactor, MAT_LUFactorSymbolic;
 66: extern int MAT_LUFactorNumeric, MAT_CholeskyFactor, MAT_CholeskyFactorSymbolic, MAT_CholeskyFactorNumeric, MAT_ILUFactor;
 67: extern int MAT_ILUFactorSymbolic, MAT_ICCFactorSymbolic, MAT_Copy, MAT_Convert, MAT_Scale, MAT_AssemblyBegin;
 68: extern int MAT_AssemblyEnd, MAT_SetValues, MAT_GetValues, MAT_GetRow, MAT_GetSubMatrices, MAT_GetColoring, MAT_GetOrdering;
 69: extern int MAT_IncreaseOverlap, MAT_Partitioning, MAT_ZeroEntries, MAT_Load, MAT_View, MAT_AXPY, MAT_FDColoringCreate;
 70: extern int MAT_FDColoringApply, MAT_Transpose;

 72: EXTERN int MatInitializePackage(char *);

 74: EXTERN int MatCreate(MPI_Comm,int,int,int,int,Mat*);
 75: EXTERN int MatSetType(Mat,MatType);
 76: EXTERN int MatSetFromOptions(Mat);
 77: EXTERN int MatSetUpPreallocation(Mat);
 78: EXTERN int MatRegisterAll(char*);
 79: EXTERN int MatRegister(char*,char*,char*,int(*)(Mat));
 80: EXTERN int MatSerializeRegister(const char [], const char [], const char [], int (*)(MPI_Comm, Mat *, PetscViewer, PetscTruth));
 81: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
 82: #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,0)
 83: #define MatSerializeRegisterDynamic(a,b,c,d) MatSerializeRegister(a,b,c,0)
 84: #else
 85: #define MatRegisterDynamic(a,b,c,d) MatRegister(a,b,c,d)
 86: #define MatSerializeRegisterDynamic(a,b,c,d) MatSerializeRegister(a,b,c,d)
 87: #endif
 88: extern PetscTruth MatRegisterAllCalled;
 89: extern PetscFList MatList;

 91: EXTERN PetscFList MatSerializeList;
 92: EXTERN int MatSerializeRegisterAll(const char []);
 93: EXTERN int MatSerializeRegisterDestroy(void);
 94: EXTERN int MatSerializeRegisterAllCalled;
 95: EXTERN int MatSerialize(MPI_Comm, Mat *, PetscViewer, PetscTruth);
 96: EXTERN int MatSetSerializeType(Mat, MatSerializeType);

 98: EXTERN int MatCreateSeqDense(MPI_Comm,int,int,PetscScalar*,Mat*);
 99: EXTERN int MatCreateMPIDense(MPI_Comm,int,int,int,int,PetscScalar*,Mat*);
100: EXTERN int MatCreateSeqAIJ(MPI_Comm,int,int,int,int*,Mat*);
101: EXTERN int MatCreateMPIAIJ(MPI_Comm,int,int,int,int,int,int*,int,int*,Mat*);
102: EXTERN int MatCreateMPIRowbs(MPI_Comm,int,int,int,int*,Mat*);
103: EXTERN int MatCreateSeqBDiag(MPI_Comm,int,int,int,int,int*,PetscScalar**,Mat*);
104: EXTERN int MatCreateMPIBDiag(MPI_Comm,int,int,int,int,int,int*,PetscScalar**,Mat*);
105: EXTERN int MatCreateSeqBAIJ(MPI_Comm,int,int,int,int,int*,Mat*);
106: EXTERN int MatCreateMPIBAIJ(MPI_Comm,int,int,int,int,int,int,int*,int,int*,Mat*);
107: EXTERN int MatCreateMPIAdj(MPI_Comm,int,int,int*,int*,int *,Mat*);
108: EXTERN int MatCreateSeqSBAIJ(MPI_Comm,int,int,int,int,int*,Mat*);
109: EXTERN int MatCreateMPISBAIJ(MPI_Comm,int,int,int,int,int,int,int*,int,int*,Mat*);
110: EXTERN int MatCreateShell(MPI_Comm,int,int,int,int,void *,Mat*);
111: EXTERN int MatCreateAdic(MPI_Comm,int,int,int,int,int,void (*)(void),Mat*);
112: EXTERN int MatDestroy(Mat);

114: EXTERN int MatPrintHelp(Mat);
115: EXTERN int MatGetPetscMaps(Mat,PetscMap*,PetscMap*);

117: /* ------------------------------------------------------------*/
118: EXTERN int MatSetValues(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
119: EXTERN int MatSetValuesBlocked(Mat,int,int*,int,int*,PetscScalar*,InsertMode);

121: /*S
122:      MatStencil - Data structure (C struct) for storing information about a single row or
123:         column of a matrix as index on an associated grid.

125:    Level: beginner

127:   Concepts: matrix; linear operator

129: .seealso:  MatSetValuesStencil(), MatSetStencil()
130: S*/
131: typedef struct {
132:   int k,j,i,c;
133: } MatStencil;

135: EXTERN int MatSetValuesStencil(Mat,int,MatStencil*,int,MatStencil*,PetscScalar*,InsertMode);
136: EXTERN int MatSetValuesBlockedStencil(Mat,int,MatStencil*,int,MatStencil*,PetscScalar*,InsertMode);
137: EXTERN int MatSetStencil(Mat,int,int*,int*,int);

139: EXTERN int MatSetColoring(Mat,ISColoring);
140: EXTERN int MatSetValuesAdic(Mat,void*);
141: EXTERN int MatSetValuesAdifor(Mat,int,void*);

143: /*E
144:     MatAssemblyType - Indicates if the matrix is now to be used, or if you plan 
145:      to continue to add values to it

147:     Level: beginner

149: .seealso: MatAssemblyBegin(), MatAssemblyEnd()
150: E*/
151: typedef enum {MAT_FLUSH_ASSEMBLY=1,MAT_FINAL_ASSEMBLY=0} MatAssemblyType;
152: EXTERN int MatAssemblyBegin(Mat,MatAssemblyType);
153: EXTERN int MatAssemblyEnd(Mat,MatAssemblyType);
154: EXTERN int MatAssembled(Mat,PetscTruth*);

156: #define MatSetValue(v,i,j,va,mode) 
157: 0; {int _ierr,_row = i,_col = j; PetscScalar _va = va; 
158:   _MatSetValues(v,1,&_row,1,&_col,&_va,mode);CHKERRQ(_ierr); 
159: }
160: #define MatGetValue(v,i,j,va) 
161: 0; {int _ierr,_row = i,_col = j; 
162:   _MatGetValues(v,1,&_row,1,&_col,&va);CHKERRQ(_ierr); 
163: }
164: #define MatSetValueLocal(v,i,j,va,mode) 
165: 0; {int _ierr,_row = i,_col = j; PetscScalar _va = va; 
166:   _MatSetValuesLocal(v,1,&_row,1,&_col,&_va,mode);CHKERRQ(_ierr); 
167: }
168: /*E
169:     MatOption - Options that may be set for a matrix and its behavior or storage

171:     Level: beginner

173:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

175: .seealso: MatSetOption()
176: E*/
177: typedef enum {MAT_ROW_ORIENTED=1,MAT_COLUMN_ORIENTED=2,MAT_ROWS_SORTED=4,
178:               MAT_COLUMNS_SORTED=8,MAT_NO_NEW_NONZERO_LOCATIONS=16,
179:               MAT_YES_NEW_NONZERO_LOCATIONS=32,MAT_SYMMETRIC=64,
180:               MAT_STRUCTURALLY_SYMMETRIC=65,MAT_NO_NEW_DIAGONALS=66,
181:               MAT_YES_NEW_DIAGONALS=67,MAT_INODE_LIMIT_1=68,MAT_INODE_LIMIT_2=69,
182:               MAT_INODE_LIMIT_3=70,MAT_INODE_LIMIT_4=71,MAT_INODE_LIMIT_5=72,
183:               MAT_IGNORE_OFF_PROC_ENTRIES=73,MAT_ROWS_UNSORTED=74,
184:               MAT_COLUMNS_UNSORTED=75,MAT_NEW_NONZERO_LOCATION_ERR=76,
185:               MAT_NEW_NONZERO_ALLOCATION_ERR=77,MAT_USE_HASH_TABLE=78,
186:               MAT_KEEP_ZEROED_ROWS=79,MAT_IGNORE_ZERO_ENTRIES=80,MAT_USE_INODES=81,
187:               MAT_DO_NOT_USE_INODES=82,MAT_USE_SINGLE_PRECISION_SOLVES=83} MatOption;
188: EXTERN int MatSetOption(Mat,MatOption);
189: EXTERN int MatGetType(Mat,MatType*);

191: EXTERN int MatGetValues(Mat,int,int*,int,int*,PetscScalar*);
192: EXTERN int MatGetRow(Mat,int,int *,int **,PetscScalar**);
193: EXTERN int MatRestoreRow(Mat,int,int *,int **,PetscScalar**);
194: EXTERN int MatGetColumn(Mat,int,int *,int **,PetscScalar**);
195: EXTERN int MatRestoreColumn(Mat,int,int *,int **,PetscScalar**);
196: EXTERN int MatGetColumnVector(Mat,Vec,int);
197: EXTERN int MatGetArray(Mat,PetscScalar **);
198: EXTERN int MatRestoreArray(Mat,PetscScalar **);
199: EXTERN int MatGetBlockSize(Mat,int *);

201: EXTERN int MatMult(Mat,Vec,Vec);
202: EXTERN int MatMultAdd(Mat,Vec,Vec,Vec);
203: EXTERN int MatMultTranspose(Mat,Vec,Vec);
204: EXTERN int MatMultTransposeAdd(Mat,Vec,Vec,Vec);
205: EXTERN int MatMultConstrained(Mat,Vec,Vec);
206: EXTERN int MatMultTransposeConstrained(Mat,Vec,Vec);

208: /*E
209:     MatDuplicateOption - Indicates if a duplicated sparse matrix should have
210:   its numerical values copied over or just its nonzero structure.

212:     Level: beginner

214:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

216: .seealso: MatDuplicate()
217: E*/
218: typedef enum {MAT_DO_NOT_COPY_VALUES,MAT_COPY_VALUES} MatDuplicateOption;

220: EXTERN int MatConvertRegister(char*,char*,char*,int (*)(Mat,MatType,Mat*));
221: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
222: #define MatConvertRegisterDynamic(a,b,c,d) MatConvertRegister(a,b,c,0)
223: #else
224: #define MatConvertRegisterDynamic(a,b,c,d) MatConvertRegister(a,b,c,d)
225: #endif
226: EXTERN int        MatConvertRegisterAll(char*);
227: EXTERN int        MatConvertRegisterDestroy(void);
228: extern PetscTruth MatConvertRegisterAllCalled;
229: extern PetscFList MatConvertList;
230: EXTERN int        MatConvert(Mat,MatType,Mat*);
231: EXTERN int        MatDuplicate(Mat,MatDuplicateOption,Mat*);

233: /*E
234:     MatStructure - Indicates if the matrix has the same nonzero structure

236:     Level: beginner

238:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

240: .seealso: MatCopy(), SLESSetOperators(), PCSetOperators()
241: E*/
242: typedef enum {SAME_NONZERO_PATTERN,DIFFERENT_NONZERO_PATTERN,SAME_PRECONDITIONER} MatStructure;

244: EXTERN int MatCopy(Mat,Mat,MatStructure);
245: EXTERN int MatView(Mat,PetscViewer);

247: EXTERN int MatLoadRegister(char*,char*,char*,int (*)(PetscViewer,MatType,Mat*));
248: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
249: #define MatLoadRegisterDynamic(a,b,c,d) MatLoadRegister(a,b,c,0)
250: #else
251: #define MatLoadRegisterDynamic(a,b,c,d) MatLoadRegister(a,b,c,d)
252: #endif
253: EXTERN int        MatLoadRegisterAll(char*);
254: EXTERN int        MatLoadRegisterDestroy(void);
255: extern PetscTruth MatLoadRegisterAllCalled;
256: extern PetscFList MatLoadList;
257: EXTERN int        MatLoad(PetscViewer,MatType,Mat*);

259: EXTERN int MatGetRowIJ(Mat,int,PetscTruth,int*,int **,int **,PetscTruth *);
260: EXTERN int MatRestoreRowIJ(Mat,int,PetscTruth,int *,int **,int **,PetscTruth *);
261: EXTERN int MatGetColumnIJ(Mat,int,PetscTruth,int*,int **,int **,PetscTruth *);
262: EXTERN int MatRestoreColumnIJ(Mat,int,PetscTruth,int *,int **,int **,PetscTruth *);

264: /*S
265:      MatInfo - Context of matrix information, used with MatGetInfo()

267:    In Fortran this is simply a double precision array of dimension MAT_INFO_SIZE

269:    Level: intermediate

271:   Concepts: matrix^nonzero information

273: .seealso:  MatGetInfo(), MatInfoType
274: S*/
275: typedef struct {
276:   PetscLogDouble rows_global,columns_global;         /* number of global rows and columns */
277:   PetscLogDouble rows_local,columns_local;           /* number of local rows and columns */
278:   PetscLogDouble block_size;                         /* block size */
279:   PetscLogDouble nz_allocated,nz_used,nz_unneeded;   /* number of nonzeros */
280:   PetscLogDouble memory;                             /* memory allocated */
281:   PetscLogDouble assemblies;                         /* number of matrix assemblies called */
282:   PetscLogDouble mallocs;                            /* number of mallocs during MatSetValues() */
283:   PetscLogDouble fill_ratio_given,fill_ratio_needed; /* fill ratio for LU/ILU */
284:   PetscLogDouble factor_mallocs;                     /* number of mallocs during factorization */
285: } MatInfo;

287: /*E
288:     MatInfoType - Indicates if you want information about the local part of the matrix,
289:      the entire parallel matrix or the maximum over all the local parts.

291:     Level: beginner

293:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

295: .seealso: MatGetInfo(), MatInfo
296: E*/
297: typedef enum {MAT_LOCAL=1,MAT_GLOBAL_MAX=2,MAT_GLOBAL_SUM=3} MatInfoType;
298: EXTERN int MatGetInfo(Mat,MatInfoType,MatInfo*);
299: EXTERN int MatValid(Mat,PetscTruth*);
300: EXTERN int MatGetDiagonal(Mat,Vec);
301: EXTERN int MatGetRowMax(Mat,Vec);
302: EXTERN int MatTranspose(Mat,Mat*);
303: EXTERN int MatPermute(Mat,IS,IS,Mat *);
304: EXTERN int MatPermuteSparsify(Mat,int,PetscReal,PetscReal,IS,IS,Mat *);
305: EXTERN int MatDiagonalScale(Mat,Vec,Vec);
306: EXTERN int MatDiagonalSet(Mat,Vec,InsertMode);
307: EXTERN int MatEqual(Mat,Mat,PetscTruth*);

309: EXTERN int MatNorm(Mat,NormType,PetscReal *);
310: EXTERN int MatZeroEntries(Mat);
311: EXTERN int MatZeroRows(Mat,IS,PetscScalar*);
312: EXTERN int MatZeroColumns(Mat,IS,PetscScalar*);

314: EXTERN int MatUseScaledForm(Mat,PetscTruth);
315: EXTERN int MatScaleSystem(Mat,Vec,Vec);
316: EXTERN int MatUnScaleSystem(Mat,Vec,Vec);

318: EXTERN int MatGetSize(Mat,int*,int*);
319: EXTERN int MatGetLocalSize(Mat,int*,int*);
320: EXTERN int MatGetOwnershipRange(Mat,int*,int*);

322: /*E
323:     MatReuse - Indicates if matrices obtained from a previous call to MatGetSubMatrices()
324:      or MatGetSubMatrix() are to be reused to store the new matrix values.

326:     Level: beginner

328:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

330: .seealso: MatGetSubMatrices(), MatGetSubMatrix(), MatDestroyMatrices()
331: E*/
332: typedef enum {MAT_INITIAL_MATRIX,MAT_REUSE_MATRIX} MatReuse;
333: EXTERN int MatGetSubMatrices(Mat,int,IS *,IS *,MatReuse,Mat **);
334: EXTERN int MatDestroyMatrices(int,Mat **);
335: EXTERN int MatGetSubMatrix(Mat,IS,IS,int,MatReuse,Mat *);

337: EXTERN int MatIncreaseOverlap(Mat,int,IS *,int);

339: EXTERN int MatAXPY(PetscScalar *,Mat,Mat,MatStructure);
340: EXTERN int MatAYPX(PetscScalar *,Mat,Mat);
341: EXTERN int MatCompress(Mat);

343: EXTERN int MatScale(PetscScalar *,Mat);
344: EXTERN int MatShift(PetscScalar *,Mat);

346: EXTERN int MatSetLocalToGlobalMapping(Mat,ISLocalToGlobalMapping);
347: EXTERN int MatSetLocalToGlobalMappingBlock(Mat,ISLocalToGlobalMapping);
348: EXTERN int MatZeroRowsLocal(Mat,IS,PetscScalar*);
349: EXTERN int MatSetValuesLocal(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
350: EXTERN int MatSetValuesBlockedLocal(Mat,int,int*,int,int*,PetscScalar*,InsertMode);

352: EXTERN int MatSetStashInitialSize(Mat,int,int);

354: EXTERN int MatInterpolateAdd(Mat,Vec,Vec,Vec);
355: EXTERN int MatInterpolate(Mat,Vec,Vec);
356: EXTERN int MatRestrict(Mat,Vec,Vec);

358: /*
359:       These three (or four) macros MUST be used together. The third one closes the open { of the first one
360: */
361: #define MatPreallocateInitialize(comm,nrows,ncols,dnz,onz) 0; 
362: { 
363:   int _4_ierr,__tmp = (nrows),__ctmp = (ncols),__rstart,__start,__end; 
364:   _4_PetscMalloc(2*__tmp*sizeof(int),&dnz);CHKERRQ(_4_ierr);onz = dnz + __tmp;
365:   _4_PetscMemzero(dnz,2*__tmp*sizeof(int));CHKERRQ(_4_ierr);
366:   _4_MPI_Scan(&__ctmp,&__end,1,MPI_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __start = __end - __ctmp;
367:   _4_MPI_Scan(&__tmp,&__rstart,1,MPI_INT,MPI_SUM,comm);CHKERRQ(_4_ierr); __rstart = __rstart - __tmp;

369: #define MatPreallocateSetLocal(map,nrows,rows,ncols,cols,dnz,onz) 0;
370: {
371:   int __l;
372:   _4_ISLocalToGlobalMappingApply(map,nrows,rows,rows);CHKERRQ(_4_ierr);
373:   _4_ISLocalToGlobalMappingApply(map,ncols,cols,cols);CHKERRQ(_4_ierr);
374:   for (__l=0;__l<nrows;__l++) {
375:     _4_MatPreallocateSet((rows)[__l],ncols,cols,dnz,onz);CHKERRQ(_4_ierr);
376:   }
377: }
378: 
379: #define MatPreallocateSet(row,nc,cols,dnz,onz) 0;
380: { int __i; 
381:   for (__i=0; __i<nc; __i++) {
382:     if (cols[__i] < __start || cols[__i] >= __end) onz[row - __rstart]++; 
383:   }
384:   dnz[row - __rstart] = nc - onz[row - __rstart];
385: }

387: #define MatPreallocateFinalize(dnz,onz) 0;_4_PetscFree(dnz);CHKERRQ(_4_ierr);}

389: /* Routines unique to particular data structures */
390: EXTERN int MatShellGetContext(Mat,void **);

392: EXTERN int MatBDiagGetData(Mat,int*,int*,int**,int**,PetscScalar***);
393: EXTERN int MatSeqAIJSetColumnIndices(Mat,int *);
394: EXTERN int MatSeqBAIJSetColumnIndices(Mat,int *);
395: EXTERN int MatCreateSeqAIJWithArrays(MPI_Comm,int,int,int*,int*,PetscScalar *,Mat*);

397: EXTERN int MatSeqBAIJSetPreallocation(Mat,int,int,int*);
398: EXTERN int MatSeqSBAIJSetPreallocation(Mat,int,int,int*);
399: EXTERN int MatSeqAIJSetPreallocation(Mat,int,int*);
400: EXTERN int MatSeqDensePreallocation(Mat,PetscScalar*);
401: EXTERN int MatSeqBDiagSetPreallocation(Mat,int,int,int*,PetscScalar**);
402: EXTERN int MatSeqDenseSetPreallocation(Mat,PetscScalar*);

404: EXTERN int MatMPIBAIJSetPreallocation(Mat,int,int,int*,int,int*);
405: EXTERN int MatMPISBAIJSetPreallocation(Mat,int,int,int*,int,int*);
406: EXTERN int MatMPIAIJSetPreallocation(Mat,int,int*,int,int*);
407: EXTERN int MatMPIDensePreallocation(Mat,PetscScalar*);
408: EXTERN int MatMPIBDiagSetPreallocation(Mat,int,int,int*,PetscScalar**);
409: EXTERN int MatMPIAdjSetPreallocation(Mat,int*,int*,int*);
410: EXTERN int MatMPIDenseSetPreallocation(Mat,PetscScalar*);
411: EXTERN int MatMPIRowbsSetPreallocation(Mat,int,int*);
412: EXTERN int MatMPIAIJGetSeqAIJ(Mat,Mat*,Mat*,int**);
413: EXTERN int MatMPIBAIJGetSeqBAIJ(Mat,Mat*,Mat*,int**);
414: EXTERN int MatAdicSetLocalFunction(Mat,void (*)(void));

416: EXTERN int MatStoreValues(Mat);
417: EXTERN int MatRetrieveValues(Mat);

419: EXTERN int MatDAADSetCtx(Mat,void*);

421: /* 
422:   These routines are not usually accessed directly, rather solving is 
423:   done through the SLES, KSP and PC interfaces.
424: */

426: /*E
427:     MatOrderingType - String with the name of a PETSc matrix ordering or the creation function
428:        with an optional dynamic library name, for example 
429:        http://www.mcs.anl.gov/petsc/lib.a:orderingcreate()

431:    Level: beginner

433: .seealso: MatGetOrdering()
434: E*/
435: typedef char* MatOrderingType;
436: #define MATORDERING_NATURAL   "natural"
437: #define MATORDERING_ND        "nd"
438: #define MATORDERING_1WD       "1wd"
439: #define MATORDERING_RCM       "rcm"
440: #define MATORDERING_QMD       "qmd"
441: #define MATORDERING_ROWLENGTH "rowlength"
442: #define MATORDERING_DSC_ND    "dsc_nd"
443: #define MATORDERING_DSC_MMD   "dsc_mmd"
444: #define MATORDERING_DSC_MDF   "dsc_mdf"
445: #define MATORDERING_CONSTRAINED "constrained"
446: #define MATORDERING_IDENTITY  "identity"
447: #define MATORDERING_REVERSE   "reverse"

449: EXTERN int MatGetOrdering(Mat,MatOrderingType,IS*,IS*);
450: EXTERN int MatOrderingRegister(char*,char*,char*,int(*)(Mat,MatOrderingType,IS*,IS*));
451: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
452: #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,0)
453: #else
454: #define MatOrderingRegisterDynamic(a,b,c,d) MatOrderingRegister(a,b,c,d)
455: #endif
456: EXTERN int        MatOrderingRegisterDestroy(void);
457: EXTERN int        MatOrderingRegisterAll(char*);
458: extern PetscTruth MatOrderingRegisterAllCalled;
459: extern PetscFList      MatOrderingList;

461: EXTERN int MatReorderForNonzeroDiagonal(Mat,PetscReal,IS,IS);

463: EXTERN int MatCholeskyFactor(Mat,IS,PetscReal);
464: EXTERN int MatCholeskyFactorSymbolic(Mat,IS,PetscReal,Mat*);
465: EXTERN int MatCholeskyFactorNumeric(Mat,Mat*);

467: /*S 
468:    MatILUInfo - Data based into the matrix ILU factorization routines

470:    In Fortran these are simply double precision arrays of size MAT_ILUINFO_SIZE

472:    Notes: These are not usually directly used by users, instead use the PC type of ILU
473:           All entries are double precision.

475:    Level: developer

477: .seealso: MatILUFactorSymbolic(), MatILUFactor(), MatLUInfo, MatCholeskyInfo

479: S*/
480: typedef struct {
481:   PetscReal     levels;         /* ILU(levels) */
482:   PetscReal     fill;           /* expected fill; nonzeros in factored matrix/nonzeros in original matrix*/
483:   PetscReal     diagonal_fill;  /* force diagonal to fill in if initially not filled */
484:   PetscReal     dt;             /* drop tolerance */
485:   PetscReal     dtcol;          /* tolerance for pivoting */
486:   PetscReal     dtcount;        /* maximum nonzeros to be allowed per row */
487:   PetscReal     damping;        /* scaling of identity added to matrix to prevent zero pivots */
488:   PetscReal     damp;           /* if is 1.0 and factorization fails, damp until successful */
489:   PetscReal     zeropivot; /* pivot is called zero if less than this */
490:   PetscReal     pivotinblocks;  /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 
491:                                    factorization may be faster if do not pivot */
492: } MatILUInfo;

494: /*S 
495:    MatLUInfo - Data based into the matrix LU factorization routines

497:    In Fortran these are simply double precision arrays of size MAT_LUINFO_SIZE

499:    Notes: These are not usually directly used by users, instead use the PC type of LU
500:           All entries are double precision.

502:    Level: developer

504: .seealso: MatLUFactorSymbolic(), MatILUInfo, MatCholeskyInfo

506: S*/
507: typedef struct {
508:   PetscReal     fill;    /* expected fill; nonzeros in factored matrix/nonzeros in original matrix */
509:   PetscReal     dtcol;   /* tolerance for pivoting; pivot if off_diagonal*dtcol > diagonal */
510:   PetscReal     damping; /* scaling of identity added to matrix to prevent zero pivots */
511:   PetscReal     damp;    /* if this is 1.0 and factorization fails, damp until successful */
512:   PetscReal     zeropivot; /* pivot is called zero if less than this */
513:   PetscReal     pivotinblocks;  /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 
514:                                    factorization may be faster if do not pivot */
515: } MatLUInfo;

517: /*S 
518:    MatCholeskyInfo - Data based into the matrix Cholesky factorization routines

520:    In Fortran these are simply double precision arrays of size MAT_CHOLESKYINFO_SIZE

522:    Notes: These are not usually directly used by users, instead use the PC type of Cholesky
523:           All entries are double precision.

525:    Level: developer

527: .seealso: MatCholeskyFactorSymbolic(), MatLUInfo, MatILUInfo

529: S*/
530: typedef struct {
531:   PetscReal     fill;    /* expected fill; nonzeros in factored matrix/nonzeros in original matrix */
532:   PetscReal     damping; /* scaling of identity added to matrix to prevent zero pivots */
533:   PetscReal     damp;    /* if this is 1.0 and factorization fails, damp until successful */
534:   PetscReal     pivotinblocks;  /* for BAIJ and SBAIJ matrices pivot in factorization on blocks, default 1.0 
535:                                    factorization may be faster if do not pivot */
536: } MatCholeskyInfo;

538: EXTERN int MatLUFactor(Mat,IS,IS,MatLUInfo*);
539: EXTERN int MatILUFactor(Mat,IS,IS,MatILUInfo*);
540: EXTERN int MatLUFactorSymbolic(Mat,IS,IS,MatLUInfo*,Mat*);
541: EXTERN int MatILUFactorSymbolic(Mat,IS,IS,MatILUInfo*,Mat*);
542: EXTERN int MatICCFactorSymbolic(Mat,IS,PetscReal,int,Mat*);
543: EXTERN int MatICCFactor(Mat,IS,PetscReal,int);
544: EXTERN int MatLUFactorNumeric(Mat,Mat*);
545: EXTERN int MatILUDTFactor(Mat,MatILUInfo*,IS,IS,Mat *);

547: EXTERN int MatSolve(Mat,Vec,Vec);
548: EXTERN int MatForwardSolve(Mat,Vec,Vec);
549: EXTERN int MatBackwardSolve(Mat,Vec,Vec);
550: EXTERN int MatSolveAdd(Mat,Vec,Vec,Vec);
551: EXTERN int MatSolveTranspose(Mat,Vec,Vec);
552: EXTERN int MatSolveTransposeAdd(Mat,Vec,Vec,Vec);

554: EXTERN int MatSetUnfactored(Mat);

556: /*  MatSORType may be bitwise ORd together, so do not change the numbers */
557: /*E
558:     MatSORType - What type of (S)SOR to perform

560:     Level: beginner

562:    May be bitwise ORd together

564:    Any additions/changes here MUST also be made in include/finclude/petscmat.h

566: .seealso: MatRelax()
567: E*/
568: typedef enum {SOR_FORWARD_SWEEP=1,SOR_BACKWARD_SWEEP=2,SOR_SYMMETRIC_SWEEP=3,
569:               SOR_LOCAL_FORWARD_SWEEP=4,SOR_LOCAL_BACKWARD_SWEEP=8,
570:               SOR_LOCAL_SYMMETRIC_SWEEP=12,SOR_ZERO_INITIAL_GUESS=16,
571:               SOR_EISENSTAT=32,SOR_APPLY_UPPER=64,SOR_APPLY_LOWER=128} MatSORType;
572: EXTERN int MatRelax(Mat,Vec,PetscReal,MatSORType,PetscReal,int,int,Vec);

574: /* 
575:     These routines are for efficiently computing Jacobians via finite differences.
576: */

578: /*E
579:     MatColoringType - String with the name of a PETSc matrix coloring or the creation function
580:        with an optional dynamic library name, for example 
581:        http://www.mcs.anl.gov/petsc/lib.a:coloringcreate()

583:    Level: beginner

585: .seealso: MatGetColoring()
586: E*/
587: typedef char* MatColoringType;
588: #define MATCOLORING_NATURAL "natural"
589: #define MATCOLORING_SL      "sl"
590: #define MATCOLORING_LF      "lf"
591: #define MATCOLORING_ID      "id"

593: EXTERN int MatGetColoring(Mat,MatColoringType,ISColoring*);
594: EXTERN int MatColoringRegister(char*,char*,char*,int(*)(Mat,MatColoringType,ISColoring *));
595: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
596: #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,0)
597: #else
598: #define MatColoringRegisterDynamic(a,b,c,d) MatColoringRegister(a,b,c,d)
599: #endif
600: EXTERN int        MatColoringRegisterAll(char *);
601: extern PetscTruth MatColoringRegisterAllCalled;
602: EXTERN int        MatColoringRegisterDestroy(void);
603: EXTERN int        MatColoringPatch(Mat,int,int,int *,ISColoring*);

605: /*S
606:      MatFDColoring - Object for computing a sparse Jacobian via finite differences
607:         and coloring

609:    Level: beginner

611:   Concepts: coloring, sparse Jacobian, finite differences

613: .seealso:  MatFDColoringCreate()
614: S*/
615: typedef struct _p_MatFDColoring *MatFDColoring;

617: EXTERN int MatFDColoringCreate(Mat,ISColoring,MatFDColoring *);
618: EXTERN int MatFDColoringDestroy(MatFDColoring);
619: EXTERN int MatFDColoringView(MatFDColoring,PetscViewer);
620: EXTERN int MatFDColoringSetFunction(MatFDColoring,int (*)(void),void*);
621: EXTERN int MatFDColoringSetParameters(MatFDColoring,PetscReal,PetscReal);
622: EXTERN int MatFDColoringSetFrequency(MatFDColoring,int);
623: EXTERN int MatFDColoringGetFrequency(MatFDColoring,int*);
624: EXTERN int MatFDColoringSetFromOptions(MatFDColoring);
625: EXTERN int MatFDColoringApply(Mat,MatFDColoring,Vec,MatStructure*,void *);
626: EXTERN int MatFDColoringApplyTS(Mat,MatFDColoring,PetscReal,Vec,MatStructure*,void *);
627: EXTERN int MatFDColoringSetRecompute(MatFDColoring);
628: EXTERN int MatFDColoringSetF(MatFDColoring,Vec);

630: /* 
631:     These routines are for partitioning matrices: currently used only 
632:   for adjacency matrix, MatCreateMPIAdj().
633: */

635: /*S
636:      MatPartitioning - Object for managing the partitioning of a matrix or graph

638:    Level: beginner

640:   Concepts: partitioning

642: .seealso:  MatParitioningCreate(), MatPartitioningType
643: S*/
644: typedef struct _p_MatPartitioning *MatPartitioning;

646: /*E
647:     MatPartitioningType - String with the name of a PETSc matrix partitioing or the creation function
648:        with an optional dynamic library name, for example 
649:        http://www.mcs.anl.gov/petsc/lib.a:partitioningcreate()

651:    Level: beginner

653: .seealso: MatPartitioingCreate(), MatPartitioning
654: E*/
655: typedef char* MatPartitioningType;
656: #define MAT_PARTITIONING_CURRENT  "current"
657: #define MAT_PARTITIONING_PARMETIS "parmetis"

659: EXTERN int MatPartitioningCreate(MPI_Comm,MatPartitioning*);
660: EXTERN int MatPartitioningSetType(MatPartitioning,MatPartitioningType);
661: EXTERN int MatPartitioningSetAdjacency(MatPartitioning,Mat);
662: EXTERN int MatPartitioningSetVertexWeights(MatPartitioning,int*);
663: EXTERN int MatPartitioningApply(MatPartitioning,IS*);
664: EXTERN int MatPartitioningDestroy(MatPartitioning);

666: EXTERN int MatPartitioningRegister(char*,char*,char*,int(*)(MatPartitioning));
667: #if defined(PETSC_USE_DYNAMIC_LIBRARIES)
668: #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,0)
669: #else
670: #define MatPartitioningRegisterDynamic(a,b,c,d) MatPartitioningRegister(a,b,c,d)
671: #endif

673: EXTERN int        MatPartitioningRegisterAll(char *);
674: extern PetscTruth MatPartitioningRegisterAllCalled;
675: EXTERN int        MatPartitioningRegisterDestroy(void);

677: EXTERN int MatPartitioningView(MatPartitioning,PetscViewer);
678: EXTERN int MatPartitioningSetFromOptions(MatPartitioning);
679: EXTERN int MatPartitioningGetType(MatPartitioning,MatPartitioningType*);

681: EXTERN int MatPartitioningParmetisSetCoarseSequential(MatPartitioning);

683: /*
684:     If you add entries here you must also add them to finclude/petscmat.h
685: */
686: typedef enum { MATOP_SET_VALUES=0,
687:                MATOP_GET_ROW=1,
688:                MATOP_RESTORE_ROW=2,
689:                MATOP_MULT=3,
690:                MATOP_MULT_ADD=4,
691:                MATOP_MULT_TRANSPOSE=5,
692:                MATOP_MULT_TRANSPOSE_ADD=6,
693:                MATOP_SOLVE=7,
694:                MATOP_SOLVE_ADD=8,
695:                MATOP_SOLVE_TRANSPOSE=9,
696:                MATOP_SOLVE_TRANSPOSE_ADD=10,
697:                MATOP_LUFACTOR=11,
698:                MATOP_CHOLESKYFACTOR=12,
699:                MATOP_RELAX=13,
700:                MATOP_TRANSPOSE=14,
701:                MATOP_GETINFO=15,
702:                MATOP_EQUAL=16,
703:                MATOP_GET_DIAGONAL=17,
704:                MATOP_DIAGONAL_SCALE=18,
705:                MATOP_NORM=19,
706:                MATOP_ASSEMBLY_BEGIN=20,
707:                MATOP_ASSEMBLY_END=21,
708:                MATOP_COMPRESS=22,
709:                MATOP_SET_OPTION=23,
710:                MATOP_ZERO_ENTRIES=24,
711:                MATOP_ZERO_ROWS=25,
712:                MATOP_LUFACTOR_SYMBOLIC=26,
713:                MATOP_LUFACTOR_NUMERIC=27,
714:                MATOP_CHOLESKY_FACTOR_SYMBOLIC=28,
715:                MATOP_CHOLESKY_FACTOR_NUMERIC=29,
716:                MATOP_SETUP_PREALLOCATION=30,
717:                MATOP_ILUFACTOR_SYMBOLIC=31,
718:                MATOP_ICCFACTOR_SYMBOLIC=32,
719:                MATOP_GET_ARRAY=33,
720:                MATOP_RESTORE_ARRAY=34,
721:                MATOP_DUPLCIATE=35,
722:                MATOP_FORWARD_SOLVE=36,
723:                MATOP_BACKWARD_SOLVE=37,
724:                MATOP_ILUFACTOR=38,
725:                MATOP_ICCFACTOR=39,
726:                MATOP_AXPY=40,
727:                MATOP_GET_SUBMATRICES=41,
728:                MATOP_INCREASE_OVERLAP=42,
729:                MATOP_GET_VALUES=43,
730:                MATOP_COPY=44,
731:                MATOP_PRINT_HELP=45,
732:                MATOP_SCALE=46,
733:                MATOP_SHIFT=47,
734:                MATOP_DIAGONAL_SHIFT=48,
735:                MATOP_ILUDT_FACTOR=49,
736:                MATOP_GET_BLOCK_SIZE=50,
737:                MATOP_GET_ROW_IJ=51,
738:                MATOP_RESTORE_ROW_IJ=52,
739:                MATOP_GET_COLUMN_IJ=53,
740:                MATOP_RESTORE_COLUMN_IJ=54,
741:                MATOP_FDCOLORING_CREATE=55,
742:                MATOP_COLORING_PATCH=56,
743:                MATOP_SET_UNFACTORED=57,
744:                MATOP_PERMUTE=58,
745:                MATOP_SET_VALUES_BLOCKED=59,
746:                MATOP_GET_SUBMATRIX=60,
747:                MATOP_DESTROY=61,
748:                MATOP_VIEW=62,
749:                MATOP_GET_MAPS=63,
750:                MATOP_USE_SCALED_FORM=64,
751:                MATOP_SCALE_SYSTEM=65,
752:                MATOP_UNSCALE_SYSTEM=66,
753:                MATOP_SET_LOCAL_TO_GLOBAL_MAPPING=67,
754:                MATOP_SET_VALUES_LOCAL=68,
755:                MATOP_ZERO_ROWS_LOCAL=69,
756:                MATOP_GET_ROW_MAX=70,
757:                MATOP_CONVERT=71,
758:                MATOP_SET_COLORING=72,
759:                MATOP_SET_VALUES_ADIC=73,
760:                MATOP_SET_VALUES_ADIFOR=74,
761:                MATOP_FD_COLORING_APPLY=75,
762:                MATOP_SET_FROM_OPTIONS=76,
763:                MATOP_MULT_CONSTRAINED=77,
764:                MATOP_MULT_TRANSPOSE_CONSTRAINED=78,
765:                MATOP_ILU_FACTOR_SYMBOLIC_CONSTRAINED=79,
766:                MATOP_PERMUTE_SPARSIFY=80,
767:                MATOP_MULT_MULTIPLE=81,
768:                MATOP_SOLVE_MULTIPLE=82
769:              } MatOperation;
770: EXTERN int MatHasOperation(Mat,MatOperation,PetscTruth*);
771: EXTERN int MatShellSetOperation(Mat,MatOperation,void(*)(void));
772: EXTERN int MatShellGetOperation(Mat,MatOperation,void(**)(void));
773: EXTERN int MatShellSetContext(Mat,void*);

775: /*
776:    Codes for matrices stored on disk. By default they are
777:  stored in a universal format. By changing the format with 
778:  PetscViewerSetFormat(viewer,PETSC_VIEWER_BINARY_NATIVE); the matrices will
779:  be stored in a way natural for the matrix, for example dense matrices
780:  would be stored as dense. Matrices stored this way may only be
781:  read into matrices of the same time.
782: */
783: #define MATRIX_BINARY_FORMAT_DENSE -1

785: /*
786:      New matrix classes not yet distributed 
787: */
788: /*
789:     MatAIJIndices is a data structure for storing the nonzero location information
790:   for sparse matrices. Several matrices with identical nonzero structure can share
791:   the same MatAIJIndices.
792: */
793: typedef struct _p_MatAIJIndices* MatAIJIndices;

795: EXTERN int MatCreateAIJIndices(int,int,int*,int*,PetscTruth,MatAIJIndices*);
796: EXTERN int MatCreateAIJIndicesEmpty(int,int,int*,PetscTruth,MatAIJIndices*);
797: EXTERN int MatAttachAIJIndices(MatAIJIndices,MatAIJIndices*);
798: EXTERN int MatDestroyAIJIndices(MatAIJIndices);
799: EXTERN int MatCopyAIJIndices(MatAIJIndices,MatAIJIndices*);
800: EXTERN int MatValidateAIJIndices(int,MatAIJIndices);
801: EXTERN int MatShiftAIJIndices(MatAIJIndices);
802: EXTERN int MatShrinkAIJIndices(MatAIJIndices);
803: EXTERN int MatTransposeAIJIndices(MatAIJIndices,MatAIJIndices*);

805: EXTERN int MatCreateSeqCSN(MPI_Comm,int,int,int*,int,Mat*);
806: EXTERN int MatCreateSeqCSN_Single(MPI_Comm,int,int,int*,int,Mat*);
807: EXTERN int MatCreateSeqCSNWithPrecision(MPI_Comm,int,int,int*,int,PetscScalarPrecision,Mat*);

809: EXTERN int MatCreateSeqCSNIndices(MPI_Comm,MatAIJIndices,int,Mat *);
810: EXTERN int MatCreateSeqCSNIndices_Single(MPI_Comm,MatAIJIndices,int,Mat *);
811: EXTERN int MatCreateSeqCSNIndicesWithPrecision(MPI_Comm,MatAIJIndices,int,PetscScalarPrecision,Mat *);

813: EXTERN int MatMPIBAIJSetHashTableFactor(Mat,PetscReal);
814: EXTERN int MatSeqAIJGetInodeSizes(Mat,int *,int *[],int *);
815: EXTERN int MatMPIRowbsGetColor(Mat,ISColoring *);

817: /*S
818:      MatNullSpace - Object that removes a null space from a vector, i.e.
819:          orthogonalizes the vector to a subsapce

821:    Level: beginner

823:   Concepts: matrix; linear operator, null space

825:   Users manual sections:
826: .   Section 4.15 Solving Singular Systems

828: .seealso:  MatNullSpaceCreate()
829: S*/
830: typedef struct _p_MatNullSpace* MatNullSpace;

832: EXTERN int MatNullSpaceCreate(MPI_Comm,int,int,Vec *,MatNullSpace*);
833: EXTERN int MatNullSpaceDestroy(MatNullSpace);
834: EXTERN int MatNullSpaceRemove(MatNullSpace,Vec,Vec*);
835: EXTERN int MatNullSpaceAttach(Mat,MatNullSpace);
836: EXTERN int MatNullSpaceTest(MatNullSpace,Mat);

838: EXTERN int MatReorderingSeqSBAIJ(Mat A,IS isp);
839: EXTERN int MatMPISBAIJSetHashTableFactor(Mat,PetscReal);
840: EXTERN int MatSeqSBAIJSetColumnIndices(Mat,int *);


843: EXTERN int MatCreateMAIJ(Mat,int,Mat*);
844: EXTERN int MatMAIJRedimension(Mat,int,Mat*);
845: EXTERN int MatMAIJGetAIJ(Mat,Mat*);

847: EXTERN int MatMPIAdjSetValues(Mat,int*,int*,int*);

849: EXTERN int MatComputeExplicitOperator(Mat,Mat*);

851: EXTERN int MatESISetType(Mat,char*);
852: EXTERN int MatESISetFromOptions(Mat);

854: EXTERN int MatDiagonalScaleLocal(Mat,Vec);

856: EXTERN int PetscViewerMathematicaPutMatrix(PetscViewer, int, int, PetscReal *);
857: EXTERN int PetscViewerMathematicaPutCSRMatrix(PetscViewer, int, int, int *, int *, PetscReal *);

859: #endif