Actual source code: sbaijfact3.c

  1: /*$Id: sbaijfact3.c,v 1.4 2001/06/21 21:17:00 bsmith Exp $*/
 2:  #include src/mat/impls/sbaij/seq/sbaij.h
 3:  #include src/inline/ilu.h

  5: /* Version for when blocks are 3 by 3  */
  6: int MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat A,Mat *B)
  7: {
  8:   Mat                C = *B;
  9:   Mat_SeqSBAIJ       *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ *)C->data;
 10:   IS                 perm = b->row;
 11:   int                *perm_ptr,ierr,i,j,mbs=a->mbs,*bi=b->i,*bj=b->j;
 12:   int                *ai,*aj,*a2anew,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili;
 13:   MatScalar          *ba = b->a,*aa,*ap,*dk,*uik;
 14:   MatScalar          *u,*diag,*rtmp,*rtmp_ptr;

 17: 
 18:   /* initialization */
 19:   PetscMalloc(9*mbs*sizeof(MatScalar),&rtmp);
 20:   PetscMemzero(rtmp,9*mbs*sizeof(MatScalar));
 21:   PetscMalloc(2*mbs*sizeof(int),&il);
 22:   jl   = il + mbs;
 23:   for (i=0; i<mbs; i++) {
 24:     jl[i] = mbs; il[0] = 0;
 25:   }
 26:   PetscMalloc(18*sizeof(MatScalar),&dk);
 27:   uik  = dk + 9;
 28:   ISGetIndices(perm,&perm_ptr);

 30:   /* check permutation */
 31:   if (!a->permute){
 32:     ai = a->i; aj = a->j; aa = a->a;
 33:   } else {
 34:     ai   = a->inew; aj = a->jnew;
 35:     PetscMalloc(9*ai[mbs]*sizeof(MatScalar),&aa);
 36:     PetscMemcpy(aa,a->a,9*ai[mbs]*sizeof(MatScalar));
 37:     PetscMalloc(ai[mbs]*sizeof(int),&a2anew);
 38:     PetscMemcpy(a2anew,a->a2anew,(ai[mbs])*sizeof(int));

 40:     for (i=0; i<mbs; i++){
 41:       jmin = ai[i]; jmax = ai[i+1];
 42:       for (j=jmin; j<jmax; j++){
 43:         while (a2anew[j] != j){
 44:           k = a2anew[j]; a2anew[j] = a2anew[k]; a2anew[k] = k;
 45:           for (k1=0; k1<9; k1++){
 46:             dk[k1]       = aa[k*9+k1];
 47:             aa[k*9+k1] = aa[j*9+k1];
 48:             aa[j*9+k1] = dk[k1];
 49:           }
 50:         }
 51:         /* transform columnoriented blocks that lie in the lower triangle to roworiented blocks */
 52:         if (i > aj[j]){
 53:           /* printf("change orientation, row: %d, col: %dn",i,aj[j]); */
 54:           ap = aa + j*9;                     /* ptr to the beginning of j-th block of aa */
 55:           for (k=0; k<9; k++) dk[k] = ap[k]; /* dk <- j-th block of aa */
 56:           for (k=0; k<3; k++){               /* j-th block of aa <- dk^T */
 57:             for (k1=0; k1<3; k1++) *ap++ = dk[k + 3*k1];
 58:           }
 59:         }
 60:       }
 61:     }
 62:     PetscFree(a2anew);
 63:   }
 64: 
 65:   /* for each row k */
 66:   for (k = 0; k<mbs; k++){

 68:     /*initialize k-th row with elements nonzero in row perm(k) of A */
 69:     jmin = ai[perm_ptr[k]]; jmax = ai[perm_ptr[k]+1];
 70:     if (jmin < jmax) {
 71:       ap = aa + jmin*9;
 72:       for (j = jmin; j < jmax; j++){
 73:         vj = perm_ptr[aj[j]];         /* block col. index */
 74:         rtmp_ptr = rtmp + vj*9;
 75:         for (i=0; i<9; i++) *rtmp_ptr++ = *ap++;
 76:       }
 77:     }

 79:     /* modify k-th row by adding in those rows i with U(i,k) != 0 */
 80:     PetscMemcpy(dk,rtmp+k*9,9*sizeof(MatScalar));
 81:     i = jl[k]; /* first row to be added to k_th row  */

 83:     while (i < mbs){
 84:       nexti = jl[i]; /* next row to be added to k_th row */

 86:       /* compute multiplier */
 87:       ili = il[i];  /* index of first nonzero element in U(i,k:bms-1) */

 89:       /* uik = -inv(Di)*U_bar(i,k) */
 90:       diag = ba + i*9;
 91:       u    = ba + ili*9;

 93:       uik[0] = -(diag[0]*u[0] + diag[3]*u[1] + diag[6]*u[2]);
 94:       uik[1] = -(diag[1]*u[0] + diag[4]*u[1] + diag[7]*u[2]);
 95:       uik[2] = -(diag[2]*u[0] + diag[5]*u[1] + diag[8]*u[2]);

 97:       uik[3] = -(diag[0]*u[3] + diag[3]*u[4] + diag[6]*u[5]);
 98:       uik[4] = -(diag[1]*u[3] + diag[4]*u[4] + diag[7]*u[5]);
 99:       uik[5] = -(diag[2]*u[3] + diag[5]*u[4] + diag[8]*u[5]);

101:       uik[6] = -(diag[0]*u[6] + diag[3]*u[7] + diag[6]*u[8]);
102:       uik[7] = -(diag[1]*u[6] + diag[4]*u[7] + diag[7]*u[8]);
103:       uik[8] = -(diag[2]*u[6] + diag[5]*u[7] + diag[8]*u[8]);

105:       /* update D(k) += -U(i,k)^T * U_bar(i,k) */
106:       dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2];
107:       dk[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2];
108:       dk[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2];

110:       dk[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5];
111:       dk[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5];
112:       dk[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5];

114:       dk[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8];
115:       dk[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8];
116:       dk[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8];

118:       /* update -U(i,k) */
119:       PetscMemcpy(ba+ili*9,uik,9*sizeof(MatScalar));

121:       /* add multiple of row i to k-th row ... */
122:       jmin = ili + 1; jmax = bi[i+1];
123:       if (jmin < jmax){
124:         for (j=jmin; j<jmax; j++) {
125:           /* rtmp += -U(i,k)^T * U_bar(i,j) */
126:           rtmp_ptr = rtmp + bj[j]*9;
127:           u = ba + j*9;
128:           rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2];
129:           rtmp_ptr[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2];
130:           rtmp_ptr[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2];

132:           rtmp_ptr[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5];
133:           rtmp_ptr[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5];
134:           rtmp_ptr[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5];

136:           rtmp_ptr[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8];
137:           rtmp_ptr[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8];
138:           rtmp_ptr[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8];
139:         }
140: 
141:         /* ... add i to row list for next nonzero entry */
142:         il[i] = jmin;             /* update il(i) in column k+1, ... mbs-1 */
143:         j     = bj[jmin];
144:         jl[i] = jl[j]; jl[j] = i; /* update jl */
145:       }
146:       i = nexti;
147:     }

149:     /* save nonzero entries in k-th row of U ... */

151:     /* invert diagonal block */
152:     diag = ba+k*9;
153:     PetscMemcpy(diag,dk,9*sizeof(MatScalar));
154:     Kernel_A_gets_inverse_A_3(diag);
155: 
156:     jmin = bi[k]; jmax = bi[k+1];
157:     if (jmin < jmax) {
158:       for (j=jmin; j<jmax; j++){
159:          vj = bj[j];           /* block col. index of U */
160:          u   = ba + j*9;
161:          rtmp_ptr = rtmp + vj*9;
162:          for (k1=0; k1<9; k1++){
163:            *u++        = *rtmp_ptr;
164:            *rtmp_ptr++ = 0.0;
165:          }
166:       }
167: 
168:       /* ... add k to row list for first nonzero entry in k-th row */
169:       il[k] = jmin;
170:       i     = bj[jmin];
171:       jl[k] = jl[i]; jl[i] = k;
172:     }
173:   }

175:   PetscFree(rtmp);
176:   PetscFree(il);
177:   PetscFree(dk);
178:   if (a->permute){
179:     PetscFree(aa);
180:   }

182:   ISRestoreIndices(perm,&perm_ptr);
183:   C->factor    = FACTOR_CHOLESKY;
184:   C->assembled = PETSC_TRUE;
185:   C->preallocated = PETSC_TRUE;
186:   PetscLogFlops(1.3333*27*b->mbs); /* from inverting diagonal blocks */
187:   return(0);
188: }