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elastix::DeformationFieldTransform< TElastix > Class Template Reference

#include <elxDeformationFieldTransform.h>

Inheritance diagram for elastix::DeformationFieldTransform< TElastix >:
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Collaboration diagram for elastix::DeformationFieldTransform< TElastix >:
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Public Types

typedef
Superclass2::CombinationTransformType 
CombinationTransformType
typedef
Superclass2::ConfigurationPointer 
ConfigurationPointer
typedef
Superclass2::ConfigurationType 
ConfigurationType
typedef SmartPointer< const SelfConstPointer
typedef Superclass2::CoordRepType CoordRepType
typedef
DeformationFieldInterpolatingTransformType::Pointer 
DeformationFieldInterpolatingTransformPointer
typedef
DeformationFieldInterpolatingTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension, float
DeformationFieldInterpolatingTransformType
typedef
DeformationFieldInterpolatingTransformType::DeformationFieldType 
DeformationFieldType
typedef
DeformationFieldInterpolatingTransformType::DeformationFieldVectorType 
DeformationFieldVectorType
typedef Superclass2::ElastixPointer ElastixPointer
typedef Superclass2::ElastixType ElastixType
typedef Superclass2::FixedImageType FixedImageType
typedef
Superclass1::InputCovariantVectorType 
InputCovariantVectorType
typedef Superclass1::InputPointType InputPointType
typedef
Superclass1::InputVectorType 
InputVectorType
typedef
Superclass1::InputVnlVectorType 
InputVnlVectorType
typedef Superclass2::ITKBaseType ITKBaseType
typedef Superclass1::JacobianType JacobianType
typedef
Superclass2::MovingImageType 
MovingImageType
typedef
Superclass1::OutputCovariantVectorType 
OutputCovariantVectorType
typedef
Superclass1::OutputPointType 
OutputPointType
typedef
Superclass1::OutputVectorType 
OutputVectorType
typedef
Superclass1::OutputVnlVectorType 
OutputVnlVectorType
typedef Superclass1::ParametersType ParametersType
typedef SmartPointer< SelfPointer
typedef
Superclass2::RegistrationPointer 
RegistrationPointer
typedef
Superclass2::RegistrationType 
RegistrationType
typedef Superclass1::ScalarType ScalarType
typedef DeformationFieldTransform Self
typedef
AdvancedCombinationTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > 
Superclass1
typedef elx::TransformBase
< TElastix > 
Superclass2

Public Member Functions

 elxClassNameMacro ("DeformationFieldTransform")
virtual const char * GetClassName () const
 itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
virtual void ReadFromFile (void)
virtual void WriteToFile (const ParametersType &param) const

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 DeformationFieldTransform ()
virtual ~DeformationFieldTransform ()

Private Types

typedef
DeformationFieldType::DirectionType 
DirectionType

Private Member Functions

 DeformationFieldTransform (const Self &)
void operator= (const Self &)

Private Attributes

DeformationFieldInterpolatingTransformPointer m_DeformationFieldInterpolatingTransform
DirectionType m_OriginalDeformationFieldDirection

Detailed Description

template<class TElastix>
class elastix::DeformationFieldTransform< TElastix >

A transform based on a DeformationField.

This transform models the transformation by a deformation vector field. This transform is NOT meant to be used for optimisation. Just use it as an initial transform, or with transformix.

The parameters used in this class are:

Parameters:
Transform: Select this transform as follows:
(Transform "DeformationFieldTransform")

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:
DeformationFieldFileName: stores the name of the deformation field.
example: (DeformationFieldFileName "defField.mhd")
Transform Parameters:
DeformationFieldInterpolationOrder: The interpolation order used for interpolating the deformation field:
example: (DeformationFieldInterpolationOrder 0)
The default value is 0. Choose from the allowed values 0 or 1.
See also:
DeformationFieldInterpolatingTransform

Definition at line 54 of file elxDeformationFieldTransform.h.


Member Typedef Documentation

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 129 of file elxDeformationFieldTransform.h.

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 122 of file elxDeformationFieldTransform.h.

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 121 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef SmartPointer< const Self > elastix::DeformationFieldTransform< TElastix >::ConstPointer
template<class TElastix >
typedef Superclass2::CoordRepType elastix::DeformationFieldTransform< TElastix >::CoordRepType

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 125 of file elxDeformationFieldTransform.h.

Definition at line 116 of file elxDeformationFieldTransform.h.

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform

Definition at line 72 of file elxDeformationFieldTransform.h.

Typedef's specific for the DeformationFieldInterpolatingTransform.

Definition at line 112 of file elxDeformationFieldTransform.h.

Definition at line 113 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef DeformationFieldType::DirectionType elastix::DeformationFieldTransform< TElastix >::DirectionType [private]

Definition at line 151 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::DeformationFieldTransform< TElastix >::ElastixPointer

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 120 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::DeformationFieldTransform< TElastix >::ElastixType

Typedef's from TransformBase.

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 119 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass2::FixedImageType elastix::DeformationFieldTransform< TElastix >::FixedImageType

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 126 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass1::InputPointType elastix::DeformationFieldTransform< TElastix >::InputPointType

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 108 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::DeformationFieldTransform< TElastix >::ITKBaseType

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 128 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass1::JacobianType elastix::DeformationFieldTransform< TElastix >::JacobianType

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 127 of file elxDeformationFieldTransform.h.

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 109 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass1::ParametersType elastix::DeformationFieldTransform< TElastix >::ParametersType

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 100 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef SmartPointer< Self > elastix::DeformationFieldTransform< TElastix >::Pointer

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 124 of file elxDeformationFieldTransform.h.

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 123 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef Superclass1::ScalarType elastix::DeformationFieldTransform< TElastix >::ScalarType
template<class TElastix >
typedef DeformationFieldTransform elastix::DeformationFieldTransform< TElastix >::Self

Standard ITK-stuff.

Reimplemented from elastix::TransformBase< TElastix >.

Definition at line 65 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef AdvancedCombinationTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension > elastix::DeformationFieldTransform< TElastix >::Superclass1

Definition at line 76 of file elxDeformationFieldTransform.h.

template<class TElastix >
typedef elx::TransformBase< TElastix > elastix::DeformationFieldTransform< TElastix >::Superclass2

Definition at line 78 of file elxDeformationFieldTransform.h.


Constructor & Destructor Documentation

template<class TElastix >
elastix::DeformationFieldTransform< TElastix >::DeformationFieldTransform ( ) [protected]

The constructor.

template<class TElastix >
virtual elastix::DeformationFieldTransform< TElastix >::~DeformationFieldTransform ( ) [inline, protected, virtual]

The destructor.

Definition at line 142 of file elxDeformationFieldTransform.h.

template<class TElastix >
elastix::DeformationFieldTransform< TElastix >::DeformationFieldTransform ( const Self ) [private]

The private constructor.


Member Function Documentation

template<class TElastix >
elastix::DeformationFieldTransform< TElastix >::elxClassNameMacro ( "DeformationFieldTransform< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "DeformationFieldTransform")

template<class TElastix >
virtual const char* elastix::DeformationFieldTransform< TElastix >::GetClassName ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >
elastix::DeformationFieldTransform< TElastix >::itkStaticConstMacro ( SpaceDimension  ,
unsigned  int,
Superclass2::FixedImageDimension   
)

Dimension of the domain space.

template<class TElastix >
static Pointer elastix::DeformationFieldTransform< TElastix >::New ( ) [static]
template<class TElastix >
void elastix::DeformationFieldTransform< TElastix >::operator= ( const Self ) [private]

The private copy constructor.

template<class TElastix >
virtual void elastix::DeformationFieldTransform< TElastix >::ReadFromFile ( void  ) [virtual]

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

template<class TElastix >
virtual void elastix::DeformationFieldTransform< TElastix >::WriteToFile ( const ParametersType param) const [virtual]

Function to write transform-parameters to a file.

Reimplemented from elastix::TransformBase< TElastix >.


Field Documentation

The transform that is set as current transform in the CcombinationTransform

Definition at line 155 of file elxDeformationFieldTransform.h.

Original direction cosines; stored to facilitate UseDirectionCosines option.

Definition at line 158 of file elxDeformationFieldTransform.h.



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