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#include <elxWeightedCombinationTransform.h>
A transform based on the itk::WeightedCombinationTransform.
This transform is a weighted combination transformation. It implements .
The transformparameters are the weighting factors for each subtransform
. You could use this to implement registration using a statistical deformation model. Each subtransform would then be a principal component that follows from your statistical model for example.
A normalization factor can optionally be used:
You can also use this class to average transformations found by previous elastix runs.
The parameters used in this class are:
(Transform "WeightedCombinationTransform")
(NormalizeCombinationWeights "true" )
(SubTransforms "tp0.txt" "TransformParameters.1.txt" "tpbspline.txt" )
(AutomaticScalesEstimation "true")
(Scales 1.0 1.0 10.0)
The transform parameters necessary for transformix, additionally defined by this class, are:
(NormalizeCombinationWeights "true" )
(SubTransforms "tp0.txt" "TransformParameters.1.txt" "tpbspline.txt" )
Definition at line 80 of file elxWeightedCombinationTransform.h.
typedef Superclass2::CombinationTransformType elastix::WeightedCombinationTransformElastix< TElastix >::CombinationTransformType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 146 of file elxWeightedCombinationTransform.h.
typedef Superclass2::CommandLineArgumentMapType elastix::WeightedCombinationTransformElastix< TElastix >::CommandLineArgumentMapType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 147 of file elxWeightedCombinationTransform.h.
typedef Superclass2::CommandLineEntryType elastix::WeightedCombinationTransformElastix< TElastix >::CommandLineEntryType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 148 of file elxWeightedCombinationTransform.h.
typedef Superclass2::ConfigurationPointer elastix::WeightedCombinationTransformElastix< TElastix >::ConfigurationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 139 of file elxWeightedCombinationTransform.h.
typedef Superclass2::ConfigurationType elastix::WeightedCombinationTransformElastix< TElastix >::ConfigurationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 138 of file elxWeightedCombinationTransform.h.
typedef SmartPointer<const Self> elastix::WeightedCombinationTransformElastix< TElastix >::ConstPointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 105 of file elxWeightedCombinationTransform.h.
typedef Superclass2::CoordRepType elastix::WeightedCombinationTransformElastix< TElastix >::CoordRepType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 142 of file elxWeightedCombinationTransform.h.
typedef Superclass2::ElastixPointer elastix::WeightedCombinationTransformElastix< TElastix >::ElastixPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 137 of file elxWeightedCombinationTransform.h.
typedef Superclass2::ElastixType elastix::WeightedCombinationTransformElastix< TElastix >::ElastixType |
Typedef's from the TransformBase class.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 136 of file elxWeightedCombinationTransform.h.
typedef Superclass2::FixedImageType elastix::WeightedCombinationTransformElastix< TElastix >::FixedImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 143 of file elxWeightedCombinationTransform.h.
typedef Superclass1::InputCovariantVectorType elastix::WeightedCombinationTransformElastix< TElastix >::InputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 128 of file elxWeightedCombinationTransform.h.
typedef Superclass1::InputPointType elastix::WeightedCombinationTransformElastix< TElastix >::InputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 132 of file elxWeightedCombinationTransform.h.
typedef Superclass1::InputVectorType elastix::WeightedCombinationTransformElastix< TElastix >::InputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 126 of file elxWeightedCombinationTransform.h.
typedef Superclass1::InputVnlVectorType elastix::WeightedCombinationTransformElastix< TElastix >::InputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 130 of file elxWeightedCombinationTransform.h.
typedef Superclass2::ITKBaseType elastix::WeightedCombinationTransformElastix< TElastix >::ITKBaseType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 145 of file elxWeightedCombinationTransform.h.
typedef Superclass1::JacobianType elastix::WeightedCombinationTransformElastix< TElastix >::JacobianType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 125 of file elxWeightedCombinationTransform.h.
typedef Superclass2::MovingImageType elastix::WeightedCombinationTransformElastix< TElastix >::MovingImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 144 of file elxWeightedCombinationTransform.h.
typedef Superclass1::OutputCovariantVectorType elastix::WeightedCombinationTransformElastix< TElastix >::OutputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 129 of file elxWeightedCombinationTransform.h.
typedef Superclass1::OutputPointType elastix::WeightedCombinationTransformElastix< TElastix >::OutputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 133 of file elxWeightedCombinationTransform.h.
typedef Superclass1::OutputVectorType elastix::WeightedCombinationTransformElastix< TElastix >::OutputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 127 of file elxWeightedCombinationTransform.h.
typedef Superclass1::OutputVnlVectorType elastix::WeightedCombinationTransformElastix< TElastix >::OutputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 131 of file elxWeightedCombinationTransform.h.
typedef Superclass1::ParametersType elastix::WeightedCombinationTransformElastix< TElastix >::ParametersType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 124 of file elxWeightedCombinationTransform.h.
typedef SmartPointer<Self> elastix::WeightedCombinationTransformElastix< TElastix >::Pointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 104 of file elxWeightedCombinationTransform.h.
typedef Superclass2::RegistrationPointer elastix::WeightedCombinationTransformElastix< TElastix >::RegistrationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 141 of file elxWeightedCombinationTransform.h.
typedef Superclass2::RegistrationType elastix::WeightedCombinationTransformElastix< TElastix >::RegistrationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 140 of file elxWeightedCombinationTransform.h.
typedef Superclass1::ScalarType elastix::WeightedCombinationTransformElastix< TElastix >::ScalarType |
Typedefs inherited from the superclass.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 123 of file elxWeightedCombinationTransform.h.
typedef Superclass2::ScalesType elastix::WeightedCombinationTransformElastix< TElastix >::ScalesType |
For scales setting in the optimizer
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 160 of file elxWeightedCombinationTransform.h.
typedef WeightedCombinationTransformElastix elastix::WeightedCombinationTransformElastix< TElastix >::Self |
Standard ITK-stuff.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 89 of file elxWeightedCombinationTransform.h.
typedef WeightedCombinationTransformType::TransformPointer elastix::WeightedCombinationTransformElastix< TElastix >::SubTransformPointer |
Definition at line 157 of file elxWeightedCombinationTransform.h.
typedef WeightedCombinationTransformType::TransformType elastix::WeightedCombinationTransformElastix< TElastix >::SubTransformType |
Definition at line 155 of file elxWeightedCombinationTransform.h.
typedef AdvancedCombinationTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension > elastix::WeightedCombinationTransformElastix< TElastix >::Superclass1 |
Definition at line 93 of file elxWeightedCombinationTransform.h.
typedef elx::TransformBase<TElastix> elastix::WeightedCombinationTransformElastix< TElastix >::Superclass2 |
Definition at line 95 of file elxWeightedCombinationTransform.h.
typedef WeightedCombinationTransformType::TransformContainerType elastix::WeightedCombinationTransformElastix< TElastix >::TransformContainerType |
Definition at line 153 of file elxWeightedCombinationTransform.h.
typedef WeightedCombinationTransformType::Pointer elastix::WeightedCombinationTransformElastix< TElastix >::WeightedCombinationTransformPointer |
Extra typedefs
Definition at line 151 of file elxWeightedCombinationTransform.h.
typedef WeightedCombinationTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension, elx::TransformBase<TElastix>::MovingImageDimension > elastix::WeightedCombinationTransformElastix< TElastix >::WeightedCombinationTransformType |
The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform
Definition at line 102 of file elxWeightedCombinationTransform.h.
elastix::WeightedCombinationTransformElastix< TElastix >::WeightedCombinationTransformElastix | ( | ) | [protected] |
The constructor.
virtual elastix::WeightedCombinationTransformElastix< TElastix >::~WeightedCombinationTransformElastix | ( | ) | [inline, protected, virtual] |
The destructor.
Definition at line 208 of file elxWeightedCombinationTransform.h.
elastix::WeightedCombinationTransformElastix< TElastix >::WeightedCombinationTransformElastix | ( | const Self & | ) | [private] |
The private constructor.
virtual void elastix::WeightedCombinationTransformElastix< TElastix >::BeforeRegistration | ( | void | ) | [virtual] |
Execute stuff before the actual registration:
Reimplemented from elastix::BaseComponent.
elastix::WeightedCombinationTransformElastix< TElastix >::elxClassNameMacro | ( | "WeightedCombinationTransform" | ) |
Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "WeightedCombinationTransform")
virtual const char* elastix::WeightedCombinationTransformElastix< TElastix >::GetClassName | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::WeightedCombinationTransformElastix< TElastix >::InitializeTransform | ( | void | ) | [virtual] |
Initialize Transform.
elastix::WeightedCombinationTransformElastix< TElastix >::itkStaticConstMacro | ( | SpaceDimension | , |
unsigned | int, | ||
Superclass2::FixedImageDimension | |||
) |
Dimension of the domain space.
virtual void elastix::WeightedCombinationTransformElastix< TElastix >::LoadSubTransforms | ( | void | ) | [virtual] |
Load from the parameter file a list of subtransforms. The filenames are stored in the m_SubTransformFileNames list
static Pointer elastix::WeightedCombinationTransformElastix< TElastix >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
void elastix::WeightedCombinationTransformElastix< TElastix >::operator= | ( | const Self & | ) | [private] |
The private copy constructor.
virtual void elastix::WeightedCombinationTransformElastix< TElastix >::ReadFromFile | ( | void | ) | [virtual] |
Function to read transform-parameters from a file.
It loads the subtransforms, the NormalizeWeights option, and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::WeightedCombinationTransformElastix< TElastix >::SetScales | ( | void | ) | [virtual] |
Set the scales
virtual void elastix::WeightedCombinationTransformElastix< TElastix >::WriteToFile | ( | const ParametersType & | param | ) | const [virtual] |
Function to write transform-parameters to a file. It writes the names of the subTransform parameterFiles. and the NormalizeWeights option, and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
std::vector< std::string > elastix::WeightedCombinationTransformElastix< TElastix >::m_SubTransformFileNames [protected] |
Definition at line 211 of file elxWeightedCombinationTransform.h.
WeightedCombinationTransformPointer elastix::WeightedCombinationTransformElastix< TElastix >::m_WeightedCombinationTransform [protected] |
Definition at line 208 of file elxWeightedCombinationTransform.h.
Generated on 11-05-2012 for elastix by ![]() |
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