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#include <elxAffineDTITransform.h>
A transform based on the itk AffineDTITransform.
This transform is an affine transformation, with a different parametrisation than the usual one. It is specialised for MR-DTI applications. See also the description of the itk::AffineDTI3DTransform.
The parameters used in this class are:
(Transform "AffineDTITransform")
(Scales -1 -1 -1 100000000 -1 -1 -1 -1 -1 -1 -1 -1)
(CenterOfRotation 128 128 90)
(AutomaticTransformInitialization "true")
The transform parameters necessary for transformix, additionally defined by this class, are: *
(CenterOfRotation 128 128 90)
(CenterOfRotationPoint 10.555 6.666 12.345)
(MatrixTranslation 1 0 0 0 1 0 0 0 0.9 0.1 0.1 0.2)
Definition at line 76 of file elxAffineDTITransform.h.
typedef AffineDTITransformType::Pointer elastix::AffineDTITransformElastix< TElastix >::AffineDTITransformPointer |
Definition at line 134 of file elxAffineDTITransform.h.
typedef AffineDTITransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::AffineDTITransformElastix< TElastix >::AffineDTITransformType |
The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform
Definition at line 97 of file elxAffineDTITransform.h.
typedef Superclass2::CombinationTransformType elastix::AffineDTITransformElastix< TElastix >::CombinationTransformType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 148 of file elxAffineDTITransform.h.
typedef Superclass2::ConfigurationPointer elastix::AffineDTITransformElastix< TElastix >::ConfigurationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 141 of file elxAffineDTITransform.h.
typedef Superclass2::ConfigurationType elastix::AffineDTITransformElastix< TElastix >::ConfigurationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 140 of file elxAffineDTITransform.h.
typedef SmartPointer<const Self> elastix::AffineDTITransformElastix< TElastix >::ConstPointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 100 of file elxAffineDTITransform.h.
typedef Superclass2::CoordRepType elastix::AffineDTITransformElastix< TElastix >::CoordRepType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 144 of file elxAffineDTITransform.h.
typedef FixedImageType::DirectionType elastix::AffineDTITransformElastix< TElastix >::DirectionType |
Definition at line 157 of file elxAffineDTITransform.h.
typedef Superclass2::ElastixPointer elastix::AffineDTITransformElastix< TElastix >::ElastixPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 139 of file elxAffineDTITransform.h.
typedef Superclass2::ElastixType elastix::AffineDTITransformElastix< TElastix >::ElastixType |
Typedef's inherited from TransformBase.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 138 of file elxAffineDTITransform.h.
typedef Superclass2::FixedImageType elastix::AffineDTITransformElastix< TElastix >::FixedImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 145 of file elxAffineDTITransform.h.
typedef FixedImageType::IndexType elastix::AffineDTITransformElastix< TElastix >::IndexType |
Other typedef's.
Definition at line 151 of file elxAffineDTITransform.h.
typedef IndexType::IndexValueType elastix::AffineDTITransformElastix< TElastix >::IndexValueType |
Definition at line 152 of file elxAffineDTITransform.h.
typedef Superclass1::InputCovariantVectorType elastix::AffineDTITransformElastix< TElastix >::InputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 129 of file elxAffineDTITransform.h.
typedef Superclass1::InputPointType elastix::AffineDTITransformElastix< TElastix >::InputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 125 of file elxAffineDTITransform.h.
typedef Superclass1::InputVectorType elastix::AffineDTITransformElastix< TElastix >::InputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 127 of file elxAffineDTITransform.h.
typedef Superclass1::InputVnlVectorType elastix::AffineDTITransformElastix< TElastix >::InputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 131 of file elxAffineDTITransform.h.
typedef Superclass2::ITKBaseType elastix::AffineDTITransformElastix< TElastix >::ITKBaseType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 147 of file elxAffineDTITransform.h.
typedef Superclass1::JacobianType elastix::AffineDTITransformElastix< TElastix >::JacobianType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 123 of file elxAffineDTITransform.h.
typedef Superclass2::MovingImageType elastix::AffineDTITransformElastix< TElastix >::MovingImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 146 of file elxAffineDTITransform.h.
typedef AffineDTITransformType::OffsetType elastix::AffineDTITransformElastix< TElastix >::OffsetType |
Definition at line 135 of file elxAffineDTITransform.h.
typedef Superclass1::OutputCovariantVectorType elastix::AffineDTITransformElastix< TElastix >::OutputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 130 of file elxAffineDTITransform.h.
typedef Superclass1::OutputPointType elastix::AffineDTITransformElastix< TElastix >::OutputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 126 of file elxAffineDTITransform.h.
typedef Superclass1::OutputVectorType elastix::AffineDTITransformElastix< TElastix >::OutputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 128 of file elxAffineDTITransform.h.
typedef Superclass1::OutputVnlVectorType elastix::AffineDTITransformElastix< TElastix >::OutputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 132 of file elxAffineDTITransform.h.
typedef Superclass1::ParametersType elastix::AffineDTITransformElastix< TElastix >::ParametersType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 122 of file elxAffineDTITransform.h.
typedef SmartPointer<Self> elastix::AffineDTITransformElastix< TElastix >::Pointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 99 of file elxAffineDTITransform.h.
typedef FixedImageType::PointType elastix::AffineDTITransformElastix< TElastix >::PointType |
Definition at line 154 of file elxAffineDTITransform.h.
typedef FixedImageType::RegionType elastix::AffineDTITransformElastix< TElastix >::RegionType |
Definition at line 156 of file elxAffineDTITransform.h.
typedef Superclass2::RegistrationPointer elastix::AffineDTITransformElastix< TElastix >::RegistrationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 143 of file elxAffineDTITransform.h.
typedef Superclass2::RegistrationType elastix::AffineDTITransformElastix< TElastix >::RegistrationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 142 of file elxAffineDTITransform.h.
typedef Superclass1::ScalarType elastix::AffineDTITransformElastix< TElastix >::ScalarType |
Typedefs inherited from the superclass. These are both in AffineDTI2D and AffineDTI3D.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 121 of file elxAffineDTITransform.h.
typedef Superclass2::ScalesType elastix::AffineDTITransformElastix< TElastix >::ScalesType |
For scales setting in the optimizer
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 164 of file elxAffineDTITransform.h.
typedef AffineDTITransformElastix elastix::AffineDTITransformElastix< TElastix >::Self |
Standard ITK-stuff.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 85 of file elxAffineDTITransform.h.
typedef FixedImageType::SizeType elastix::AffineDTITransformElastix< TElastix >::SizeType |
Definition at line 153 of file elxAffineDTITransform.h.
typedef FixedImageType::SpacingType elastix::AffineDTITransformElastix< TElastix >::SpacingType |
Definition at line 155 of file elxAffineDTITransform.h.
typedef AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::AffineDTITransformElastix< TElastix >::Superclass1 |
Definition at line 89 of file elxAffineDTITransform.h.
typedef elx::TransformBase< TElastix > elastix::AffineDTITransformElastix< TElastix >::Superclass2 |
Definition at line 91 of file elxAffineDTITransform.h.
typedef TransformInitializerType::Pointer elastix::AffineDTITransformElastix< TElastix >::TransformInitializerPointer |
Definition at line 161 of file elxAffineDTITransform.h.
typedef CenteredTransformInitializer< AffineDTITransformType, FixedImageType, MovingImageType> elastix::AffineDTITransformElastix< TElastix >::TransformInitializerType |
Definition at line 160 of file elxAffineDTITransform.h.
elastix::AffineDTITransformElastix< TElastix >::AffineDTITransformElastix | ( | ) | [protected] |
The constructor.
virtual elastix::AffineDTITransformElastix< TElastix >::~AffineDTITransformElastix | ( | ) | [inline, protected, virtual] |
The destructor.
Definition at line 214 of file elxAffineDTITransform.h.
elastix::AffineDTITransformElastix< TElastix >::AffineDTITransformElastix | ( | const Self & | ) | [private] |
The private constructor.
virtual void elastix::AffineDTITransformElastix< TElastix >::BeforeRegistration | ( | void | ) | [virtual] |
Execute stuff before the actual registration:
Reimplemented from elastix::BaseComponent.
elastix::AffineDTITransformElastix< TElastix >::elxClassNameMacro | ( | "AffineDTITransform" | ) |
Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "AffineDTITransform")
virtual const char* elastix::AffineDTITransformElastix< TElastix >::GetClassName | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::AffineDTITransformElastix< TElastix >::InitializeTransform | ( | void | ) | [virtual] |
Initialize Transform.
It is not yet possible to enter an initial rotation angle.
elastix::AffineDTITransformElastix< TElastix >::itkStaticConstMacro | ( | SpaceDimension | , |
unsigned | int, | ||
Superclass2::FixedImageDimension | |||
) |
Dimension of the fixed image.
static Pointer elastix::AffineDTITransformElastix< TElastix >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
void elastix::AffineDTITransformElastix< TElastix >::operator= | ( | const Self & | ) | [private] |
The private copy constructor.
virtual bool elastix::AffineDTITransformElastix< TElastix >::ReadCenterOfRotationPoint | ( | InputPointType & | rotationPoint | ) | const [protected, virtual] |
Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates.
virtual void elastix::AffineDTITransformElastix< TElastix >::ReadFromFile | ( | void | ) | [virtual] |
Function to read transform-parameters from a file.
It reads the center of rotation and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::AffineDTITransformElastix< TElastix >::SetScales | ( | void | ) | [virtual] |
Set the scales
virtual void elastix::AffineDTITransformElastix< TElastix >::WriteToFile | ( | const ParametersType & | param | ) | const [virtual] |
Function to write transform-parameters to a file. It writes the center of rotation to file and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
AffineDTITransformPointer elastix::AffineDTITransformElastix< TElastix >::m_AffineDTITransform [private] |
Definition at line 227 of file elxAffineDTITransform.h.
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